pneumo-pyper创建bioconda包步骤.txt

github密钥 Personal access tokens (classic): 

1.切换到工作文件夹为“bioconda包推送”
cd /Users/zilinyang/Desktop/bioconda包推送

2.在github中进入bioconda-recipes,然后创建fork,下载bioconda-recipes到“bioconda包推送”文件夹
git clone https://github.com/Xiangyang1984/bioconda-recipes.git

注意: 必须确保bioconda-recipes为最新版本,如不是最新版本,请删除bioconda-recipes fork, 再次创建bioconda-recipes fork.

3.将pneumo-typer-v1.0.1文件夹打包为pneumo-typer-v1.0.2.tar.gz
tar czf pneumo-typer-v1.0.2.tar.gz pneumo-typer-v1.0.2

4.获取shasum码
shasum -a 256 pneumo-typer-v1.0.2.tar.gz

5.将Pneumo-Typer-v1.0.2.tar.gz上传至网页https://www.microbialgenomic.cn/temp_dir
perl /Users/zilinyang/Desktop/网页制作/autorun.pl pneumo-typer-v1.0.2.tar.gz

6.将编写好的recipes “pneumo-typer” 复制到bioconda-recipes/recipes文件夹
cp pneumo-typer bioconda-recipes/recipes

7. 切换到工作文件夹为“bioconda-recipes”
cd bioconda-recipes
创建分支
git checkout master #先切换到主分支(master), 并保证你的主分支处于最新状态
git checkout -b pneumo-typer #创建新的分支，用于处理当前的菜谱
git add recipes/pneumo-typer
git commit -m "add pneumo-typer recipes"
git push origin pneumo-typer --force

在https://github.com/Xiangyang1984/bioconda-recipes网页界面会出现 "compare and pull requests",点击进入后,open pull requests,然后根据测试结果,对recipes进行调试直至成功为止.