NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(as.data.frame,atacr)
S3method(as.matrix,atacr)
S3method(plot,atacr)
S3method(print,atacr)
S3method(summary,atacr)
export(as.DGEList)
export(calc_quantiles)
export(chromosome_coverage)
export(control_window_normalise)
export(control_window_scaling_factors)
export(count_windows_under_threshold)
export(coverage_count_summary)
export(coverage_summary)
export(edgeR_exact)
export(edgeR_multiclass)
export(estimate_GoFs)
export(estimate_bayes_factor)
export(estimate_bayes_factor_multiclass)
export(estimate_fdr)
export(estimate_fdr_multiclass)
export(extract_features_from_gff)
export(find_controls_by_GoF)
export(get_GoF_factors)
export(get_expected_values)
export(library_size_normalisation)
export(library_size_scaling_factors)
export(ma_data)
export(ma_plot)
export(make_UpSetR)
export(make_counts)
export(make_params)
export(make_tutorial_data)
export(median_virtual_experiment)
export(normalise_by_window_width)
export(observed_expected_bins)
export(plot_GoF)
export(plot_count_by_chromosome)
export(plot_counts)
export(qqarb)
export(sample_correlation_plot)
export(sample_kmeans_cluster)
export(sample_pca_plot)
export(scale_factor_normalise)
export(simulate_counts)
export(target_count_coverage)
export(target_count_summary)
export(text_to_gff)
export(treatments)
export(view_gene)
export(windows_below_coverage_threshold_plot)
importFrom(SummarizedExperiment,rbind)
importFrom(graphics,hist)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,rlnorm)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,start)
importFrom(stats,t.test)
importFrom(stats,window)
importFrom(utils,capture.output)
importFrom(utils,read.csv)
importFrom(utils,str)