🐛 circumvent timeout error -> decrease training time of tutorial

- currently tutorial is not running through on READTHEDOCS - see: executablebooks/MyST-NB#583 - 🐛 fix table formatting
RasmussenLab · Feb 5, 2024 · f7ea5b9 · f7ea5b9
1 parent 3b77222
commit f7ea5b9
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/project/04_1_train_pimms_models.ipynb b/project/04_1_train_pimms_models.ipynb
@@ -441,7 +441,7 @@
    "outputs": [],
    "source": [
     "model.fit(train_X, val_X,\n",
-    "          epochs_max=50,\n",
+    "          epochs_max=30,\n",
     "          cuda=False)"
    ]
   },

diff --git a/project/04_1_train_pimms_models.py b/project/04_1_train_pimms_models.py
@@ -215,7 +215,7 @@
 
 # %%
 model.fit(train_X, val_X,
-          epochs_max=50,
+          epochs_max=30,
           cuda=False)
 
 # %%

diff --git a/project/README.md b/project/README.md
@@ -5,13 +5,15 @@
 Required is abundance data in wide or long format in order to run the models. 
 
 | Sample ID | Protein A | Protein B | Protein C | ... |
+| --- | --- | --- | --- | --- |
 | sample_01 | 0.1       | 0.2       | 0.3       | ... |
 | sample_02 | 0.2       | 0.1       | 0.4       | ... |
 | sample_03 | 0.3       | 0.2       | 0.1       | ... |
 
 or as long formated data.
 
 | Sample ID | Protein | Abundance |
+| --- | --- | --- |
 | sample_01 | Protein A | 0.1       |
 | sample_01 | Protein B | 0.2       |
 | sample_01 | Protein C | 0.3       |