_config.yml

# Site configuration
# 1. Files excluded from Jekyll builds
# 2. Installed Gems
# 3. Gem settings
# 4. Jekyll settings
# 5. Collections
# 6. Jekyll collections settings
# 7. Site settings
# 8. Site navigation

# 1. Files excluded from Jekyll builds
exclude:
- README.md
- LICENSE
- CNAME
- Gemfile
- Gemfile.lock
- alembic-jekyll-theme.gemspec
- assets/lectures
- assets/course_scripts

# 2. Installed Gems
plugins:
- jekyll-sitemap
- jekyll-mentions
- jekyll-paginate
- jekyll-seo-tag
- jekyll-redirect-from
- jekyll-feed
- jemoji

# 3. Gem settings
paginate: 2 # jekyll-paginate > items per page
paginate_path: blog/page:num # jekyll-paginate > blog page
jekyll-mentions: https://twitter.com # jekyll-mentions > service used when @replying
twitter:
  username: zlskidmore # jekyll-seo-tag > Owners twitter username
author: Zachary Skidmore # jekyll-seo-tag > default author
social: # jekyll-seo-tag > social overrides
  name: Zachary Skidmore # jekyll-seo-tag > real name
  links:  # jekyll-seo-tag > social aliases (sameAs)
    - https://twitter.com/zlskidmore
    - https://github.com/zlskidmore

# 4. Jekyll settings
sass:
  style: compressed # Style compression
permalink: pretty  # Permalink style (/YYYY/MM/DD/page-name/)
excerpt_separator: <!-- more --> # Marks end of excerpt in posts
timezone: UTC # Timezone for blog posts and alike

markdown: kramdown

kramdown:
  auto_ids: true

# 5. Collections
collections:
  posts:
    title: Posts # Needed for Siteleaf
    output: true
    description: "My thoughts and ideas" # The post list page content
    feature_text: |
      Welcome to the blog
    feature_image: "assets/genvis-dna-bg_optimized_v1a.png"

# 6. Jekyll collections settings
defaults:
  -
    scope:
      path: ""
      type: pages
    values:
      layout: page # Default layout
      image: "/assets/DNA.jpg" # Default image for sharing
  -
    scope:
      path: ""
      type: posts
    values:
      layout: post # Default layout
      image: "/assets/DNA.jpg" # Default image for sharing

# 7. Site settings
encoding: utf-8 # Make sure the encoding is right
title: "Griffith Lab" # Site name or title, also used in jekyll-seo-tag
logo: "/assets/Site_Logo3_v2.png" # Site logo, also used in jekyll-seo-tag
logo_link: "http://www.griffithlab.org"
description: "This resource is structured in a modular format. Users would benefit from familiarity with topics covered in previous modules however it is not a requirement unless stated otherwise." # Site description and default description, also used in jekyll-seo-tag
url: "http://www.pmbio.org/" # Site url, also used in jekyll-seo-tag
baseurl: ""
repo: "https://github.com/griffithlab/pmbio.org"
email: "zskidmor@wustl.edu"
avatarurl:  "/assets/DNA.jpg"# Uses avatars for favicons to get multple sites, eg Gravatar, Twitter, GitHub


# 8. Site navigation
navigation_header:
  Home: /
  Course: /course/
  Schedule: /schedule/
  Authors: /authors/
  Resources: /resources/
  Acknowledgments: /acknowledgements/
  Search: /search/

navigation_footer:
  McDonnell Genome Institute - Washington University: http://genome.wustl.edu/

contact_obi:
    twitter:    https://twitter.com/obigriffith
    github:     https://github.com/obigriffith
    link:       "https://obigriffith.github.io/"

contact_malachi:
    twitter:    https://twitter.com/malachigriffith
    github: https://github.com/malachig
    link: "https://malachig.github.io/"

contact_zach:
    twitter:  https://twitter.com/zlskidmore
    github: https://github.com/zlskidmore

contact_katie:
    github: https://github.com/kcampbel
    twitter: https://twitter.com/CampKatiee

social_links:
  #Twitter:
  #LinkedIn:
  #Google+:
  GitHub: https://github.com/griffithlab/pmbio.org
  #link:

sharing_links:
#  Twitter: "#1DA1F2"
#  facebook: "#3B5998"
#  Google+: "#DC4E41"
#  Reddit: "#FF4500"