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transposon families flag #120

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cflsjt opened this issue Sep 25, 2018 · 1 comment
Open

transposon families flag #120

cflsjt opened this issue Sep 25, 2018 · 1 comment

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@cflsjt
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cflsjt commented Sep 25, 2018 •
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-f/--families Repeat element/transposon categories to be used. These must be exact string match's   to start of read name and are used to split reads into categories for analysis. Not specifying at least   one valid category will result in empty output files. Default = None.

Does this mean if I don't out in anything it won't retrun anything or maybe there's a default to run through ALL families?
@timothymillar
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The default value is an empty string '' which means all transposons will be treated as the same family i.e. clustered together.

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@cflsjt @timothymillar