diff --git a/CHANGELOG.md b/CHANGELOG.md index 6680321b..dc2e51c8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## 1.4dev - [28-Feb-2024] +## 1.4 - [04-Mar-2024] ### `Added` @@ -17,21 +17,29 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 8. Replaced custom GUNZIP module with nf-core/gunzip 9. Replaced custom gt/stat with pfr/gt/stat 10. Replaced custom fasta_validator with nf-core/fastavalidator -11. Removed BIOCODE GFF3 STATS owing to its frequent failures -12. Added pre-commit version checking -13. Now gt/stat reports extended stats and multiple distribution plots have been added to the report -14. Added a tools tab to the report which lists the tools used by the pipeline to create the report -15. Refactored and cleaned data flows for all the custom sub-workflow -16. Started using nf-core template -17. Started using semantic versioning -18. Moved all python depending packages to 'docker.io/gallvp/python3npkgs:v0.6' +11. Added pre-commit version checking +12. Now gt/stat reports extended stats and multiple distribution plots have been added to the report +13. Added a tools tab to the report which lists the tools used by the pipeline to create the report +14. Refactored and cleaned data flows for all the custom sub-workflow +15. Started using nf-core template +16. Started using semantic versioning +17. Moved all python depending packages to 'docker.io/gallvp/python3npkgs:v0.6' ### `Fixed` +1. All modules are now emitting versioning information +2. Fixed a bug which caused LAI to run with null assembly fasta +3. Fixed FASTA_LTRRETRIEVER_LAI sub-workflow so that it respects `monoploid_ids` parameter. + ### `Dependencies` +1. NextFlow!>=23.04.0 +2. nf-validation@1.1.3 + ### `Deprecated` +1. Removed BIOCODE GFF3 STATS owing to its frequent failures + ## v1.3 [08-Feb-2023] 1. Docker engine is now also supported diff --git a/version_check.sh b/version_check.sh index 04a714f7..e23860d3 100755 --- a/version_check.sh +++ b/version_check.sh @@ -10,5 +10,5 @@ fi # Check CHANGELOG version -grep "## $config_version" CHANGELOG.md >/dev/null \ +grep "## $config_version - " CHANGELOG.md >/dev/null \ || (echo 'Failed to match CHANGELOG version'; exit 1)