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Show bioassay sparsity metrics in the diagnostic tab #1295

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arteymix opened this issue Nov 23, 2024 · 0 comments
Open
2 of 3 tasks

Show bioassay sparsity metrics in the diagnostic tab #1295

arteymix opened this issue Nov 23, 2024 · 0 comments
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gui Issues or pull requests involving the Web UI single cell Issues related to single-cell data support

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@arteymix
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arteymix commented Nov 23, 2024

Sparsity metrics are populated every time a new set of single-cell vectors is marked as preferred.

Those metrics are also computed for aggregated expression data.

The values are raw counts (i.e. number of cells expressed, number of genes present, etc.) so they would have to be adjusted and displayed as a percentage.

  • add a section to the experiment QC tag for single cell metrics
  • include metrics in the subset view
  • include metrics in the bioassay view
@arteymix arteymix added gui Issues or pull requests involving the Web UI single cell Issues related to single-cell data support labels Nov 23, 2024
@arteymix arteymix self-assigned this Nov 23, 2024
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Labels
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