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Use raw or transformed counts #13

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kloot opened this issue Mar 17, 2024 · 1 comment
Open

Use raw or transformed counts #13

kloot opened this issue Mar 17, 2024 · 1 comment

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@kloot
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kloot commented Mar 17, 2024

Hi, could you please clarify whether one should use raw (and perhaps filtered) counts, or transformed (eg. SCTransformed or normalized) counts when estimating Rogue values?
Thanks in advance!
@anemartinezlarrinaga2898
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Hello Im having the same doubt!

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@kloot @anemartinezlarrinaga2898