diff --git a/.testing/STRs.benchmark.tsv b/.testing/STRs.benchmark.tsv index 2b0f96b..3b471a6 100644 --- a/.testing/STRs.benchmark.tsv +++ b/.testing/STRs.benchmark.tsv @@ -1,6 +1,6 @@ -chrom start end sample repeatunit reflen locuscoverage outlier p_adj bpInsertion repeatUnits -chr13 70713515 70713561 11 AGC 15.3 35 1.88685648944145 0.0295898153640992 316.950118548597 120.950039516199 -chr13 70713515 70713561 69 AGC 15.3 8 0.4297790752454 0.333678177749521 76.1210174457791 40.6736724819264 -chr13 70713515 70713561 1 AGC 15.3 3 -0.426744171073212 0.665217162914456 32.9115187238725 26.2705062412908 -chr13 70713515 70713561 54 AGC 15.3 2 -0.730726313557163 0.7675268301731 24.4403744973217 23.4467914991072 -chr13 70713515 70713561 49 AGC 15.3 1 -1.15916508005647 0.876805548823274 16.0677184130193 20.6559061376731 +chrom start end sample repeatunit reflen locuscoverage total_assigned outlier p_adj bpInsertion repeatUnits repeatUnits_max +chr13 70713515 70713561 11_L001_R1 AGC 15.3 35 52.0 1.9 0.03 317.0 121.0 172.9 +chr13 70713515 70713561 69_L001_R1 AGC 15.3 8 8.0 0.4 0.33 76.1 40.7 40.7 +chr13 70713515 70713561 1_L001_R1 AGC 15.3 3 3.0 -0.4 0.67 32.9 26.3 26.3 +chr13 70713515 70713561 54_L001_R1 AGC 15.3 2 2.0 -0.7 0.77 24.4 23.4 23.4 +chr13 70713515 70713561 49_L001_R1 AGC 15.3 1 1.0 -1.2 0.88 16.1 20.7 20.7 diff --git a/.travis.yml b/.travis.yml index 6e58058..6c33799 100644 --- a/.travis.yml +++ b/.travis.yml @@ -11,6 +11,7 @@ script: # Run the test data - ../tools/bin/bpipe run ../pipelines/STRetch_exome_pipeline.groovy ../test-data/*.fastq.gz - if diff STRs.tsv ../.testing/STRs.benchmark.tsv; then echo exit 0; else echo exit 1; fi +#- diff STRs.tsv ../.testing/STRs.benchmark.tsv after_script: - head *.locus_counts *.STR_counts *.median_cov - head *.tsv