terminate called after throwing an instance of 'std::out_of_range'

[mw18f]

Hi, there is an error shows when run process_transcriptome_align_table. Any solutions? Thank you.

Done reading in transcript IDs
Reading the input alignment file, AP169/AP169.paf
0
terminate called after throwing an instance of 'std::out_of_range'
what(): map::at
Aborted (core dumped)

[nadiadavidson]

Hi,
Apologies for the very slow reply. Is the file AP169/AP169.paf empty? If so, can you remove it and try rerunning the pipeline? If it still fails and an empty AP169/AP169.paf is generated, you may want to check that the pipeline was installed correctly by running the demo data (https://github.com/Oshlack/JAFFA/wiki/Example).

Cheers,
Nadia.