testing_coverage.yml

name: pytest and coverage report

# Triggers the workflow on push for all branches and PR only for main
on:
  push:
    branches:
      - '*'
  pull_request:
    branches:
      - main

jobs:
  pytest:
    runs-on: ubuntu-latest
    steps:
      # Check out repo and set up Python
      - name: Check out the repository
        uses: actions/checkout@v4
        with:
          lfs: true

# see https://stackoverflow.com/questions/57612428/cloning-private-github-repository-within-organisation-in-actions and https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent#generating-a-new-ssh-key
      - name: checkout test data
        run: |
          eval `ssh-agent -s`
          ssh-add - <<< '${{ secrets.TEST_DATA_ACCESS_KEY }}'
          git submodule sync --recursive
          git submodule update --init --recursive

      # Use cached python and dependencies, install poetry
      - name: "Setup Python, Poetry and Dependencies"
        uses: packetcoders/action-setup-cache-python-poetry@main
        with:
          python-version: 3.8
          poetry-version: 1.2.2

      # Run pytest with coverage report, saving to xml
      - name: Run tests on python 3.8
        run: |
          poetry run pytest --cov --cov-report xml:cobertura.xml --full-trace --show-capture=no -sv -n auto tests/

      # Take report and upload to coveralls
      - name: Coveralls
        uses: coverallsapp/github-action@v2
        with:
          github-token: ${{ secrets.GITHUB_TOKEN }}
          file: ./cobertura.xml