adding data to the package

NajlaAbassi · Nov 7, 2024 · 5e32fd9 · 5e32fd9
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diff --git a/R/iSEEfierWorkshop2024-data.R b/R/iSEEfierWorkshop2024-data.R
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+#' A sample `SingleCellExperiment` object
+#'
+#'
+#' @details This `SingleCellExperiment` object is obtained from the `scRNAseq`
+#' package. It corresponds to the `tophat_counts` assay of the `allen` dataset.
+#' 
+#' This object was processed to have log-transformed counts as well as different
+#' dimentionality coordinates, including PCA, TSNE and UMAP.
+#'
+#'
+#' @format A `SingleCellExperiment` object
+#'
+#' @source Details on how this object has been created are included in the
+#' `create_iSEEfierWorkshop2024_data.R` script, included in the (installed) `inst/scripts`
+#' folder of the `iSEEfierWorkshop2024` package. This is also available at
+#' \url{https://github.com/NajlaAbassi/iSEEfierWorkshop2024/devel/inst/scripts/create_iSEEfierWorkshop2024_data.R}
+#'
+#' @references Tasic et al. "Adult mouse cortical cell taxonomy revealed
+#' by single cell transcriptomics", Nature Neuroscience, January 2016
+#' doi:10.1038/nn.4216
+#' 
+#' @name sce_allen
+#' @docType data
+#'
+NULL
diff --git a/data/sce_allen.RData b/data/sce_allen.RData
diff --git a/data/sce_allen.rda b/data/sce_allen.rda
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