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Update select JEDI hashes - DO NOT MERGE #1377

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RussTreadon-NOAA wants to merge 201 commits into develop from feature/stable-nightly

sorc/fv3-jedi

Submodule fv3-jedi updated 106 files

sorc/ioda

Submodule ioda updated 105 files

sorc/iodaconv

Submodule iodaconv updated 1 files

+5 −0		src/gsi_ncdiag/gsi_ncdiag.py

sorc/oops

Submodule oops updated 46 files

+1 −1		CMakeLists.txt
+0 −4		qg/mains/CMakeLists.txt
+0 −3		src/CMakeLists.txt
+12 −38		src/oops/base/EnsembleCovariance.h
+0 −115		src/oops/base/ForecastParameters.h
+0 −16		src/oops/base/Geometry.h
+43 −185		src/oops/base/ModelSpaceCovarianceBase.h
+0 −48		src/oops/base/ModelSpaceCovarianceParametersBase.h
+0 −3		src/oops/base/Observers.h
+0 −1		src/oops/coupled/ModelCoupled.h
+0 −1		src/oops/coupled/StateCoupled.h
+5 −9		src/oops/generic/HtlmEnsemble.h
+4 −24		src/oops/interface/ErrorCovariance.h
+1 −30		src/oops/interface/Geometry.h
+1 −0		src/oops/interface/LinearVariableChange.h
+2 −0		src/oops/interface/VariableChange.h
+2 −3		src/oops/runs/AddIncrement.h
+20 −60		src/oops/runs/AdjointForecast.h
+2 −3		src/oops/runs/ConvertIncrement.h
+2 −4		src/oops/runs/ConvertState.h
+4 −11		src/oops/runs/ConvertToStructuredGrid.h
+2 −3		src/oops/runs/DiffStates.h
+1 −2		src/oops/runs/EnsMeanAndVariance.h
+1 −2		src/oops/runs/EnsRecenter.h
+4 −11		src/oops/runs/EnsembleGETKFApplication.h
+1 −3		src/oops/runs/EnsembleInflation.h
+1 −3		src/oops/runs/ExternalDFI.h
+5 −32		src/oops/runs/Forecast.h
+4 −8		src/oops/runs/GenEnsPertB.h
+1 −3		src/oops/runs/HofX3D.h
+1 −3		src/oops/runs/HofX4D.h
+1 −3		src/oops/runs/HybridGain.h
+1 −2		src/oops/runs/LocalEnsembleDA.h
+1 −2		src/oops/runs/RescaleEnsPerts.h
+4 −7		src/oops/runs/SqrtOfVertLoc.h
+0 −38		src/test/interface/ErrorCovariance.h
+4 −3		src/test/interface/Geometry.h
+0 −70		src/test/interface/GeometryFixture.h
+4 −3		src/test/interface/GeometryIterator.h
+2 −2		src/test/interface/GlobalInterpolator.h
+1 −3		src/test/interface/ModelAuxControl.h
+1 −3		src/test/interface/ModelAuxCovariance.h
+1 −3		src/test/interface/ModelAuxIncrement.h
+1 −2		src/test/interface/State.h
+3 −2		src/test/interface/UnstructuredInterpolator.h
+2 −3		src/test/util/CompareStates.h

sorc/saber

Submodule saber updated 7 files

+22 −0		src/saber/generic/DuplicateVariables.cc
+1 −3		src/saber/oops/ErrorCovariance.h
+16 −3		src/saber/oops/ErrorCovarianceParameters.h
+10 −11		src/saber/oops/ErrorCovarianceToolbox.h
+1 −5		src/saber/oops/ProcessPerts.h
+2 −3		src/saber/oops/Utilities.h
+0 −2		src/saber/spectralb/spectralbParameters.h

sorc/ufo

Submodule ufo updated 16 files

+2 −0		src/ufo/filters/CMakeLists.txt
+34 −13		src/ufo/filters/obsfunctions/ObsErrorFactorPressureCheck.cc
+26 −0		src/ufo/filters/obsfunctions/ObsErrorFactorPressureCheck.h
+166 −0		src/ufo/filters/obsfunctions/TropopauseHeight.cc
+97 −0		src/ufo/filters/obsfunctions/TropopauseHeight.h
+1 −1		src/ufo/operators/sfcpcorrected/ufo_sfcpcorrected_mod.F90
+2 −0		src/ufo/utils/Constants.h
+12 −28		src/ufo/variabletransforms/Cal_Humidity.cc
+10 −0		test/testinput/unit_tests/filters/obsfunctions/CMakeLists.txt
+52 −0		test/testinput/unit_tests/filters/obsfunctions/function_tropopauseheight.yaml
+6 −6		test/testinput/unit_tests/variabletransforms/CMakeLists.txt
+26 −0		test/testinput/unit_tests/variabletransforms/variabletransforms_rhumidity.yaml
+27 −0		test/testinput/unit_tests/variabletransforms/variabletransforms_rhumidity_part2.yaml
+35 −0		test/testinput/unit_tests/variabletransforms/variabletransforms_rhumidity_part3.yaml
+26 −0		test/testinput/unit_tests/variabletransforms/variabletransforms_shumidity.yaml
+40 −0		test/testinput/unit_tests/variabletransforms/variabletransforms_virtualtemperature.yaml

sorc/vader

Submodule vader updated 101 files

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