Merge branch 'feature/rescale-aero-b' of https://github.com/NOAA-EMC/…

…GDASApp into feature/rescale-aero-b

ci/hera.sh

@@ -6,3 +6,4 @@ export SALLOC_ACCOUNT=$SLURM_ACCOUNT
 export SBATCH_ACCOUNT=$SLURM_ACCOUNT
 export SLURM_QOS=debug
 export PATH=$PATH:/home/role.jedipara/bin
+export NTASKS_TESTS=12

ci/orion.sh

@@ -8,3 +8,4 @@ export SLURM_QOS=debug
 export SLURM_EXCLUSIVE=user
 export OMP_NUM_THREADS=1
 ulimit -s unlimited
+export NTASKS_TESTS=12

ci/run_ci.sh

@@ -61,7 +61,7 @@ module use $GDAS_MODULE_USE
 module load GDAS/$TARGET
 echo "---------------------------------------------------" >> $outfile
 rm -rf log.ctest
-ctest -R gdasapp --output-on-failure &>> log.ctest
+ctest -j${NTASKS_TESTS} -R gdasapp --output-on-failure &>> log.ctest
 ctest_status=$?
 npassed=$(cat log.ctest | grep "tests passed")
 if [ $ctest_status -eq 0 ]; then

ci/run_gw_ci.sh

@@ -62,7 +62,7 @@ module use $repodir/sorc/gdas.cd/modulefiles
 module load GDAS/$TARGET
 echo "---------------------------------------------------" >> $outfile
 rm -rf log.ctest
-ctest -R gdasapp --output-on-failure &>> log.ctest
+ctest -j${NTASKS_TESTS} -R gdasapp --output-on-failure &>> log.ctest
 ctest_status=$?
 npassed=$(cat log.ctest | grep "tests passed")
 if [ $ctest_status -eq 0 ]; then

parm/atm/jcb-base.yaml.j2

@@ -27,6 +27,11 @@ final_prints_frequency: PT3H
 number_of_outer_loops: 2
 analysis_variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr]
 
+# Testing
+# -------
+
+do_testing: {{ DO_TEST_MODE | default(false, true) }}
+
 # Model things
 # ------------
 # Geometry

parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2

@@ -0,0 +1,10 @@
+# Algorithm
+# ---------
+algorithm: fv3jedi_fv3inc_variational
+
+# Testing things
+# --------------
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_3dvar-fv3inc.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_3dvar-fv3inc.test.out
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

parm/atm/jcb-prototype_3dvar.yaml.j2

@@ -30,3 +30,10 @@ observations:
 #  - scatwind_ascat_metop-a
 #  - snowcvr
 #  - abi_g16
+
+# Testing things
+# --------------
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_3dvar.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_3dvar.test.out
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2

@@ -0,0 +1,10 @@
+# Algorithm
+# ---------
+algorithm: fv3jedi_fv3inc_lgetkf
+
+# Testing things
+# --------------
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf-fv3inc.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf-fv3inc.test.out
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

parm/atm/jcb-prototype_lgetkf.yaml.j2

@@ -38,3 +38,10 @@ observations:
   - satwnd.viirs_npp
 #  - scatwind_ascat_metop-a
 #  - snowcvr
+
+# Testing things
+# --------------
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf.test.out
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

parm/atm/jcb-prototype_lgetkf_observer.yaml.j2

@@ -44,3 +44,10 @@ atmosphere_obsdataout_prefix: diag_lobs_
 
 # Distribution type
 distribution_type: RoundRobin
+
+# Testing things
+# --------------
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf_observer.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf_observer.test.out
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

parm/atm/jcb-prototype_lgetkf_solver.yaml.j2

@@ -47,3 +47,10 @@ atmosphere_obsdataout_prefix: diag_solv_
 
 # Distribution type
 distribution_type: Halo
+
+# Testing things
+# --------------
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf_solver.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf_solver.test.out
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

parm/soca/marine-jcb-3dfgat.yaml.j2

@@ -3,3 +3,10 @@ algorithm: 3dfgat
 
 # Observations
 observations: !INC ${OBS_LIST_SHORT}
+
+# Testing things
+# --------------
+test_reference_filename: '{{HOMEgfs}}/sorc/gdas.cd/test/testreference/C48mx500_3DVarAOWCDA_3dfgat.ref'
+test_output_filename: '{{HOMEgfs}}/sorc/gdas.cd/build/gdas/test/testoutput/C48mx500_3DVarAOWCDA_3dfgat.test.out'
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

parm/soca/marine-jcb-base.yaml

@@ -26,6 +26,10 @@ final_prints_frequency: PT3H
 number_of_outer_loops: 1
 analysis_variables: [sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness, sea_water_salinity, sea_water_potential_temperature, eastward_sea_water_velocity, northward_sea_water_velocity, sea_surface_height_above_geoid]
 
+# Testing
+# -------
+
+do_testing: '{{ DO_TEST_MODE | default(false, true) }}'
 
 # Model things
 # ------------

test/CMakeLists.txt

@@ -24,7 +24,6 @@ file(ARCHIVE_EXTRACT INPUT ${CMAKE_CURRENT_BINARY_DIR}/${TAR}
   DESTINATION ${CMAKE_CURRENT_BINARY_DIR})
 # list of test binary/data files to install
 list(APPEND test_data
-  ${CMAKE_CURRENT_BINARY_DIR}/testdata/atminc_compress.nc4
   ${CMAKE_CURRENT_BINARY_DIR}/testdata/adt.nc
   ${CMAKE_CURRENT_BINARY_DIR}/testdata/sst.nc
   ${CMAKE_CURRENT_BINARY_DIR}/testdata/sss.nc
@@ -120,11 +119,6 @@ add_test(NAME test_gdasapp_check_yaml_keys
 #         WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/)
 # commented out above test because it does not really do as advertised with all these templates which are not valid yaml
 
-# test for ush/jediinc2fv3.py
-add_test(NAME test_gdasapp_jedi_increment_to_fv3
-         COMMAND ${Python3_EXECUTABLE} ${PROJECT_SOURCE_DIR}/ush/jediinc2fv3.py ${PROJECT_BINARY_DIR}/test/testdata/atmges_compress.nc4 ${PROJECT_BINARY_DIR}/test/testdata/atminc_compress.nc4 ${PROJECT_BINARY_DIR}/test/testoutput/fv_increment.nc
-         WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/)
-
 # high level tests that require the global-workflow
 # TODO(AFE) see GDASApp issue #1213
 #if (WORKFLOW_TESTS)
@@ -136,7 +130,6 @@ add_test(NAME test_gdasapp_jedi_increment_to_fv3
 #endif()
 
 if (${BUILD_GDASBUNDLE})
-  add_subdirectory(fv3jedi)   # fv3jedi tests
   add_subdirectory(snow)      # snow da tests
   add_subdirectory(gw-ci)   # subset of the global-workflow ci tests
 endif()

test/atm/global-workflow/CMakeLists.txt

@@ -1,63 +1,86 @@
 # test for creating an experiment directory within the global-workflow
 file(MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
 
-add_test(NAME test_gdasapp_setup_atm_cycled_exp
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/setup_workflow_exp.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_var_init
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_init.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_var_run
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_run.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_var_inc
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_inc.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_var_final
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_final.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_ens_init
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_init.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_ens_letkf
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_letkf.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-	  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_ens_init_split
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_init_split.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_ens_obs
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_obs.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-          WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_ens_sol
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_sol.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-          WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
+ecbuild_add_test(TARGET test_gdasapp_setup_atm_cycled_exp
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/setup_workflow_exp.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_var_init
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_init.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_setup_atm_cycled_exp)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_var_run
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_run.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_var_init)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_var_inc
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_inc.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_var_run)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_var_final
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_final.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_var_inc)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_init
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_init.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_setup_atm_cycled_exp)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_letkf
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_letkf.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+	         WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_ens_init)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_init_split
+                 TYPE SCRIPT                 
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_init_split.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_ens_letkf)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_obs
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_obs.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_ens_init_split)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_sol
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_sol.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_ens_obs)
 
-add_test(NAME test_gdasapp_atm_jjob_ens_inc
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_inc.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
-
-add_test(NAME test_gdasapp_atm_jjob_ens_final
-  COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_final.sh
-          ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
-  WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun)
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_inc
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_inc.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_ens_sol)
+
+ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_final
+                 TYPE SCRIPT
+                 COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_final.sh
+                 ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
+                 WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun
+                 TEST_DEPENDS test_gdasapp_atm_jjob_ens_inc)
 

test/atm/global-workflow/config.yaml

@@ -8,9 +8,11 @@ base:
   DUMPDIR: "@dumpdir@"
   STMP: "@bindir@/test/atm/global-workflow/testrun"
   PTMP: "@bindir@/test/atm/global-workflow/testrun"
+  DO_TEST_MODE: "YES"
 
 atmanl:
   JCB_ALGO_YAML_VAR: "@srcdir@/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2"
+  JCB_ALGO_YAML_FV3INC: "@srcdir@/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2"  
   STATICB_TYPE: "identity"
   ATMRES_ANL: "C48"
   LAYOUT_X_ATMANL: 1
@@ -20,5 +22,6 @@ atmensanl:
   JCB_ALGO_YAML_LETKF: "@srcdir@/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2"
   JCB_ALGO_YAML_OBS: "@srcdir@/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2"
   JCB_ALGO_YAML_SOL: "@srcdir@/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2"
+  JCB_ALGO_YAML_FV3INC: "@srcdir@/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2"  
   LAYOUT_X_ATMENSANL: 1
   LAYOUT_Y_ATMENSANL: 1

test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2

@@ -0,0 +1,10 @@
+# Algorithm
+# ---------
+algorithm: fv3jedi_fv3inc_variational
+
+# Testing things
+# --------------
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_3dvar-fv3inc.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_3dvar-fv3inc.test.out
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2

@@ -17,7 +17,7 @@ atmosphere_obsdatain_suffix: ".{{ current_cycle | to_YMDH }}.nc"
 
 # Testing things
 # --------------
-test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/atm/global-workflow/3dvar.ref
-test_output_filename: ./3dvar.out
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_3dvar.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_3dvar.test.out
 test_float_relative_tolerance: 1.0e-3
 test_float_absolute_tolerance: 1.0e-5

test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2

@@ -0,0 +1,10 @@
+# Algorithm
+# ---------
+algorithm: fv3jedi_fv3inc_lgetkf
+
+# Testing things
+# --------------
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf-fv3inc.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf-fv3inc.test.out
+test_float_relative_tolerance: 1.0e-3
+test_float_absolute_tolerance: 1.0e-5

test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2

@@ -22,7 +22,7 @@ atmosphere_obsdatain_suffix: ".{{ current_cycle | to_YMDH }}.nc"
 
 # Testing things
 # --------------
-test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/atm/global-workflow/lgetkf.ref
-test_output_filename: ./lgetkf.out
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf.test.out
 test_float_relative_tolerance: 1.0e-3
 test_float_absolute_tolerance: 1.0e-5

test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2

@@ -28,7 +28,7 @@ distribution_type: RoundRobin
 
 # Testing things
 # --------------
-test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/atm/global-workflow/lgetkf_observer.ref
-test_output_filename: ./lgetkf_observer.out
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf_observer.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf_observer.test.out
 test_float_relative_tolerance: 1.0e-3
 test_float_absolute_tolerance: 1.0e-5

test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2

@@ -28,7 +28,7 @@ distribution_type: Halo
 
 # Testing things
 # --------------
-test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/atm/global-workflow/lgetkf_solver.ref
-test_output_filename: ./lgetkf_solver.out
+test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf_solver.ref
+test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf_solver.test.out
 test_float_relative_tolerance: 1.0e-3
 test_float_absolute_tolerance: 1.0e-5