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test_cli.py #16

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manny809dr opened this issue Mar 22, 2017 · 2 comments

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manny809dr commented Mar 22, 2017

Both test_cases passing the convert and converter function are not working

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childers commented Mar 22, 2017

@manny809dr can you paste your path and sample commands?

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manny809dr commented Mar 28, 2017 •

edited

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`from cli import command
from tests.test_utilities import Capturing
from cli.assembly import fetch_assembly_report, get_mapper, convert, converter

def test_fetch_GRCh38():
url = fetch_assembly_report("GRCh38")
print(url)
assert not url == "gasdf"
assert url == "http://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GCF_000001405.26_GRCh38_assembly_report.txt"

def test_get_mapper():
assert get_mapper("http://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GCF_000001405.26_GRCh38_assembly_report.txt")

def test_convert():
assert convert()

def test_converter():
assert converter()

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