Test validate_selection; if fail, print logs in CI

.github/workflows/matcher_ci.yml

@@ -20,10 +20,11 @@ jobs:
       # Tests succeed iff containers exit 0
       run: |
         errors=0
-        container_ids=$(sudo sh -c "docker ps | grep -E 'matcher-backend|matcher_backend' | awk '{ print \$1 }'")
+        container_ids=$(docker ps | grep -E 'matcher-backend|matcher_backend' | awk '{ print $1 }')
         for container_id in $container_ids; do
           if [ $(docker wait $container_id) -ne 0 ]; then
             errors=$((errors+1))
+            docker logs $container_id
           fi
         done
         if [ $errors -ne 0 ]; then

backend/initialize_db/test_start.sh

@@ -14,7 +14,7 @@ metadata=$INITIALIZE_DIR/test_metadata.csv
 example_queries=$INITIALIZE_DIR/example_queries.json
 
 if [[ "$RUN_TESTS" == "true" ]]; then
-    conda run --no-capture-output -n matcher-api pytest -s ./backend/tests/unit_tests || exit 1
+    conda run --no-capture-output -n matcher-api pytest -s -v ./backend/tests/unit_tests || exit 1
     # Only run unit tests for now
     exit 0
 fi

backend/tests/unit_tests/test_validate_selection.py

@@ -1,9 +1,27 @@
 """Test validate_selection function."""
-import sys
 
 from backend.ss_select import validate_selection
+from backend.models import SketchedContent
 
-def test_hello_world():
-    print("Test validate_selection")
-    #assert 1 == 0
-    return None
+def test_validate_selection():
+
+    mol1_molfile = """
+  Ketcher 103023 8282D 1   1.00000     0.00000     0
+
+  2  1  0  0  0  0            999 V2000
+    4.9167   -5.8333    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
+    5.7827   -5.3333    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
+  1  2  1  0     0  0
+M  END
+"""
+    selection_type = 'variable'
+    sketched_content = SketchedContent.parse_obj({'mol1_molfile': mol1_molfile})
+    mol1_selected_atoms = '1'
+    mol1_selected_bonds = ''
+    mol2_selected_atoms = ''
+    mol2_selected_bonds = ''
+
+    result = validate_selection(selection_type, sketched_content, mol1_selected_atoms, 
+        mol1_selected_bonds, mol2_selected_atoms, mol2_selected_bonds)
+
+    assert result == ([1], [], [0], [], 'False', [], [], [], [], 'False')