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problem in uploading file.tsv from DIANN #67

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serenacamerini73 opened this issue Jul 18, 2023 · 0 comments
Open

problem in uploading file.tsv from DIANN #67

serenacamerini73 opened this issue Jul 18, 2023 · 0 comments

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@serenacamerini73
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I have uploaded tsv.file froma DIANN...all the single files appear to be selected but I have these messages with a final error:

Traceback (most recent call last):
File "tornado\ioloop.py", line 741, in _run_callback
ret = callback()
File "tornado\ioloop.py", line 765, in _discard_future_result
future.result()
File "bokeh\server\session.py", line 67, in _needs_document_lock_wrapper
result = func(self, *args, **kwargs)
File "bokeh\server\session.py", line 195, in with_document_locked
return func(*args, **kwargs)
File "bokeh\document\document.py", line 1183, in wrapper
return doc._with_self_as_curdoc(invoke)
File "bokeh\document\document.py", line 1169, in _with_self_as_curdoc
return f()
File "bokeh\document\document.py", line 1182, in invoke
return f(*args, **kwargs)
File "bokeh\document\document.py", line 972, in remove_then_invoke
return callback(*args, **kwargs)
File "panel\reactive.py", line 204, in _change_event
self._process_events(events)
File "panel\reactive.py", line 187, in _process_events
self.param.set_param(**self.process_property_change(events))
File "param\parameterized.py", line 1451, in set_param
self
._batch_call_watchers()
File "param\parameterized.py", line 1578, in _batch_call_watchers
watcher.fn(*events)
File "panel\param.py", line 739, in _replace_pane
new_object = self.eval(self.object)
File "panel\param.py", line 663, in eval
return function(*args, **kwargs)
File "param\parameterized.py", line 337, in _depends
return func(*args,**kw)
File "alphamap\gui.py", line 1452, in upload_data
upload_organism_info()
File "alphamap\gui.py", line 1138, in upload_organism_info
full_fasta = import_fasta(select_organism.value)
File "alphamap\organisms_data.py", line 89, in import_fasta
with urllib.request.urlopen(github_file) as response, open(os.path.join(DATA_PATH, fasta_name), 'wb') as out_file:
PermissionError: [Errno 13] Permission denied: 'C:\Program Files (x86)\AlphaMap\alphamap\..\alphamap\data\mouse.fasta'

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