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44 Open 39 Closed
44 Open 39 Closed
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Issues list

use example data but have no SNV, how should I do
#87 opened Nov 28, 2024 by kyleYin7
How to set up the preprocessing part of the chromosome
#86 opened Nov 7, 2024 by qiqi277
Error while loading shared libraries: libncurses.so.5 not found
#85 opened Oct 30, 2024 by ttt-404
1
"NA" in putativeSNV.csv$LDrefine_trioLoci_score and LDrefine_merged_score
#84 opened Oct 19, 2024 by Arsenalwins
1
How to run Monopogen gremlin on R2 of 10x fastq
#82 opened Oct 14, 2024 by amirshams84
1
java.lang.OutOfMemoryError when running beagle
#79 opened Oct 8, 2024 by wkdeng
1
Questions about genotype phasing for each SNV in each cell
#75 opened Sep 10, 2024 by Li-Chengyu
2
handling chromosome X
#73 opened Aug 19, 2024 by xiaolinzhu
2
Monopogen treats multiple samples as single sample in germline SNV calling
#72 opened Aug 14, 2024 by yu-tong-wang
3
Number of Called Variants
#70 opened Jul 30, 2024 by keertikoya
1
Incorrect version of beagle when using conda install monopogen
#69 opened Jul 11, 2024 by hima-anbunathan-takara
5
Running monopogen on very large samples
#68 opened Jul 11, 2024 by aidanshoham12
Can i run Monopogen for non-tumor sample?
#67 opened Jul 8, 2024 by ZehangJiang
1
germ line module not detecting full chromosome
#65 opened Jun 23, 2024 by aidanshoham12
3
Somatic Module on multiple chromosomes
#64 opened May 31, 2024 by Arsamat
openCRAVAT application
#63 opened May 24, 2024 by ariannadib
2
bam.lst file format
#62 opened May 23, 2024 by aidanshoham12
1
Error during LDrefinement
#61 opened May 21, 2024 by Thapeachydude
@ZiyiWang7
10
Different somatic calls across Monopogen v.1.0 and v1.6.0 help wanted Extra attention is needed
#58 opened May 9, 2024 by ypershad
5
Missing chr20.germline.vcf from germline calling step
#55 opened May 7, 2024 by briansha
8
Error in Germline SNV calling
#54 opened May 7, 2024 by Teerapon789
5
outputs of cellScan
#53 opened May 6, 2024 by ariannadib
3
region "-o" specifies an unknown reference name
#51 opened May 3, 2024 by ariannadib
1
chr20.gp.vcf.gz: No such file or directory
#50 opened Apr 7, 2024 by dipingxian431
5
Germline job never finish
#47 opened Mar 27, 2024 by MetteBoge
12
ProTip! Updated in the last three days: updated:>2024-11-26.