diff --git a/docs/_sources/index.rst.txt b/docs/_sources/index.rst.txt
index 8f9bb5ff..57fb989e 100644
--- a/docs/_sources/index.rst.txt
+++ b/docs/_sources/index.rst.txt
@@ -17,7 +17,7 @@ Adelie documentation
 `Issue Tracker <https://github.com/JamesYang007/adelie/issues>`_ 
 
 
-Adelie is a fast and flexible Python package for solving group elastic net problems. 
+Adelie is a fast and flexible Python package for solving group lasso and elastic net problems. 
 It offers a general purpose group elastic net solver, 
 a wide range of matrix classes that can exploit special structure to allow large-scale inputs,
 and an assortment of generalized linear model (GLM) classes for fitting various types of data.
diff --git a/docs/index.html b/docs/index.html
index 4499db7e..881430a0 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -345,7 +345,7 @@ <h1>Adelie documentation<a class="headerlink" href="#adelie-documentation" title
 <a class="reference external" href="https://jamesyang007.github.io/adelie/notebooks/installation.html">Installation</a> |
 <a class="reference external" href="https://github.com/JamesYang007/adelie">Source Repository</a> |
 <a class="reference external" href="https://github.com/JamesYang007/adelie/issues">Issue Tracker</a></p>
-<p>Adelie is a fast and flexible Python package for solving group elastic net problems.
+<p>Adelie is a fast and flexible Python package for solving group lasso and elastic net problems.
 It offers a general purpose group elastic net solver,
 a wide range of matrix classes that can exploit special structure to allow large-scale inputs,
 and an assortment of generalized linear model (GLM) classes for fitting various types of data.
diff --git a/docs/searchindex.js b/docs/searchindex.js
index e675a2fe..5578912a 100644
--- a/docs/searchindex.js
+++ b/docs/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"API Reference": [[0, "api-reference"]], "Adelie documentation": [[97, "adelie-documentation"]], "Clean-up Files": [[98, "Clean-up-Files"]], "Common Number of Threads": [[104, "Common-Number-of-Threads"]], "Convert to snpdat Format": [[98, "Convert-to-snpdat-Format"]], "Covariance Matrix Class": [[103, "Covariance-Matrix-Class"]], "Covariance Method": [[105, "Covariance-Method"]], "Cross-Validation": [[98, "Cross-Validation"]], "Custom GLM Class": [[100, "Custom-GLM-Class"]], "Custom Matrix Class": [[103, "Custom-Matrix-Class"]], "Developer Installation": [[101, "Developer-Installation"]], "Examples": [[98, "Examples"]], "Examples of Parallelism": [[104, "Examples-of-Parallelism"]], "Fit Lasso": [[98, "Fit-Lasso"]], "Frequently-Asked Questions": [[99, "Frequently-Asked-Questions"]], "GLM Group Elastic Net": [[105, "GLM-Group-Elastic-Net"]], "Gaussian Group Elastic Net": [[105, "Gaussian-Group-Elastic-Net"]], "Generalized Linear Model": [[100, "Generalized-Linear-Model"]], "Global Configurations": [[105, "Global-Configurations"]], "Group Lasso": [[105, "Group-Lasso"]], "Group Lasso with Interaction Terms": [[98, "Group-Lasso-with-Interaction-Terms"]], "How to properly solve for a single regularization value?": [[99, "How-to-properly-solve-for-a-single-regularization-value?"]], "Installation": [[101, "Installation"]], "Internal": [[0, "internal"]], "Introduction to Group Elastic Net": [[102, "Introduction-to-Group-Elastic-Net"]], "Lasso": [[105, "Lasso"]], "Lasso on GWAS Datasets": [[98, "Lasso-on-GWAS-Datasets"]], "Load the Dense SNP Matrix": [[98, "Load-the-Dense-SNP-Matrix"]], "Load the Feature Matrix": [[98, "Load-the-Feature-Matrix"]], "Matrix": [[103, "Matrix"]], "Model-X Knockoffs with Lasso Feature Importance Scores": [[98, "Model-X-Knockoffs-with-Lasso-Feature-Importance-Scores"]], "Multi-Response GLM": [[100, "Multi-Response-GLM"]], "Multi-Response GLM Elastic Net": [[105, "Multi-Response-GLM-Elastic-Net"]], "Multi-Response Group Elastic Net": [[102, "Multi-Response-Group-Elastic-Net"]], "Naive Matrix Class": [[103, "Naive-Matrix-Class"]], "Optimal Number of Threads": [[104, "Optimal-Number-of-Threads"]], "Parallelism": [[104, "Parallelism"]], "Prerequisites": [[101, "Prerequisites"]], "Process All Chromosomes": [[98, "Process-All-Chromosomes"]], "Quickstart": [[105, "Quickstart"]], "Run Diagnostics (optional)": [[98, "Run-Diagnostics-(optional)"]], "SNP Data Analysis": [[106, "SNP-Data-Analysis"]], "SNP Phased Ancestry": [[98, "SNP-Phased-Ancestry"], [106, "SNP-Phased-Ancestry"]], "SNP Unphased": [[106, "SNP-Unphased"]], "Single-Response GLM": [[100, "Single-Response-GLM"]], "Single-Response Group Elastic Net": [[102, "Single-Response-Group-Elastic-Net"]], "Thread Safety": [[104, "Thread-Safety"]], "User Guide": [[107, "user-guide"]], "Verify Installation": [[101, "Verify-Installation"]], "adelie.adelie_core.configs.Configs": [[1, "adelie-adelie-core-configs-configs"]], 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"adelie.adelie_core.matrix.MatrixCovBlockDiag64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixcovdense64f method)": [[15, "adelie.adelie_core.matrix.MatrixCovDense64F.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixcovlazycov64f method)": [[16, "adelie.adelie_core.matrix.MatrixCovLazyCov64F.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixcovsparse64f method)": [[17, "adelie.adelie_core.matrix.MatrixCovSparse64F.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivebase64 method)": [[18, "adelie.adelie_core.matrix.MatrixNaiveBase64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivecconcatenate64 method)": [[19, "adelie.adelie_core.matrix.MatrixNaiveCConcatenate64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivecsubset64 method)": [[20, "adelie.adelie_core.matrix.MatrixNaiveCSubset64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivedense64f method)": [[21, "adelie.adelie_core.matrix.MatrixNaiveDense64F.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f method)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivekroneckereye64 method)": [[23, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivekroneckereyedense64f method)": [[24, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaiveonehotdense64f method)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaiverconcatenate64 method)": [[26, "adelie.adelie_core.matrix.MatrixNaiveRConcatenate64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaiversubset64 method)": [[27, "adelie.adelie_core.matrix.MatrixNaiveRSubset64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivesnpphasedancestry64 method)": [[28, "adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivesnpunphased64 method)": [[29, "adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivesparse64f method)": [[30, "adelie.adelie_core.matrix.MatrixNaiveSparse64F.bmul", false]], "bmul() (adelie.adelie_core.matrix.matrixnaivestandardize64 method)": [[31, "adelie.adelie_core.matrix.MatrixNaiveStandardize64.bmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaivebase64 method)": [[18, "adelie.adelie_core.matrix.MatrixNaiveBase64.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaivecconcatenate64 method)": [[19, "adelie.adelie_core.matrix.MatrixNaiveCConcatenate64.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaivecsubset64 method)": [[20, "adelie.adelie_core.matrix.MatrixNaiveCSubset64.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaivedense64f method)": [[21, "adelie.adelie_core.matrix.MatrixNaiveDense64F.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f method)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaivekroneckereye64 method)": [[23, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaivekroneckereyedense64f method)": [[24, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaiveonehotdense64f method)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaiverconcatenate64 method)": [[26, "adelie.adelie_core.matrix.MatrixNaiveRConcatenate64.btmul", false]], "btmul() (adelie.adelie_core.matrix.matrixnaiversubset64 method)": [[27, "adelie.adelie_core.matrix.MatrixNaiveRSubset64.btmul", false]], "btmul() 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false]], "cols() (adelie.adelie_core.matrix.matrixnaivedense64f method)": [[21, "adelie.adelie_core.matrix.MatrixNaiveDense64F.cols", false]], "cols() (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f method)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.cols", false]], "cols() (adelie.adelie_core.matrix.matrixnaivekroneckereye64 method)": [[23, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64.cols", false]], "cols() (adelie.adelie_core.matrix.matrixnaivekroneckereyedense64f method)": [[24, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F.cols", false]], "cols() (adelie.adelie_core.matrix.matrixnaiveonehotdense64f method)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.cols", false]], "cols() (adelie.adelie_core.matrix.matrixnaiverconcatenate64 method)": [[26, "adelie.adelie_core.matrix.MatrixNaiveRConcatenate64.cols", false]], "cols() (adelie.adelie_core.matrix.matrixnaiversubset64 method)": [[27, 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"cov() (adelie.adelie_core.matrix.matrixnaivestandardize64 method)": [[31, "adelie.adelie_core.matrix.MatrixNaiveStandardize64.cov", false]], "cox() (in module adelie.glm)": [[68, "adelie.glm.cox", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivebase64 method)": [[18, "adelie.adelie_core.matrix.MatrixNaiveBase64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivecconcatenate64 method)": [[19, "adelie.adelie_core.matrix.MatrixNaiveCConcatenate64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivecsubset64 method)": [[20, "adelie.adelie_core.matrix.MatrixNaiveCSubset64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivedense64f method)": [[21, "adelie.adelie_core.matrix.MatrixNaiveDense64F.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f method)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivekroneckereye64 method)": [[23, 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(adelie.adelie_core.matrix.matrixnaivesparse64f method)": [[30, "adelie.adelie_core.matrix.MatrixNaiveSparse64F.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivestandardize64 method)": [[31, "adelie.adelie_core.matrix.MatrixNaiveStandardize64.ctmul", false]], "cv_grpnet() (in module adelie.cv)": [[48, "adelie.cv.cv_grpnet", false]], "cvgrpnetresult (class in adelie.cv)": [[47, "adelie.cv.CVGrpnetResult", false]], "dbeta_tol (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.dbeta_tol", false]], "dbeta_tol_def (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.dbeta_tol_def", false]], "ddev_tol (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.ddev_tol", false]], "dense() (in module adelie.data)": [[49, "adelie.data.dense", false]], "dense() (in module adelie.matrix)": [[77, "adelie.matrix.dense", false]], "devs (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.devs", false]], "devs (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.devs", false]], "devs (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.devs", false]], "devs (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.devs", false]], "devs (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.devs", false]], "diagnostic() (in module adelie.diagnostic)": [[55, "adelie.diagnostic.diagnostic", false]], "diagnosticcov (class in adelie.diagnostic)": [[52, "adelie.diagnostic.DiagnosticCov", false]], "diagnosticnaive (class in adelie.diagnostic)": [[53, "adelie.diagnostic.DiagnosticNaive", false]], "dual_size (adelie.adelie_core.constraint.constraintbase64 attribute)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.dual_size", false]], "dual_size (adelie.adelie_core.constraint.constraintlowerupper64 attribute)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.dual_size", false]], "duals() (adelie.adelie_core.constraint.constraintbase64 method)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.duals", false]], "duals() (adelie.adelie_core.constraint.constraintlowerupper64 method)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.duals", false]], "eager_cov() (in module adelie.matrix)": [[78, "adelie.matrix.eager_cov", false]], "early_exit (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.early_exit", false]], "early_exit (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.early_exit", false]], "early_exit (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.early_exit", false]], "early_exit (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.early_exit", false]], "early_exit (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.early_exit", false]], "endian (adelie.io.snp_phased_ancestry attribute)": [[73, "adelie.io.snp_phased_ancestry.endian", false]], "endian (adelie.io.snp_unphased attribute)": [[74, "adelie.io.snp_unphased.endian", false]], "eta (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.eta", false]], "eta (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.eta", false]], "fit() (adelie.cv.cvgrpnetresult method)": [[47, "adelie.cv.CVGrpnetResult.fit", false]], "gaussian() (in module adelie.glm)": [[69, "adelie.glm.gaussian", false]], "gaussian_cov() (in module adelie.solver)": [[88, "adelie.solver.gaussian_cov", false]], "gaussian_cov() (in module adelie.state)": [[90, "adelie.state.gaussian_cov", false]], "gaussian_naive() (in module adelie.state)": [[91, "adelie.state.gaussian_naive", false]], "gaussian_pin_cov() (in module adelie.state)": [[92, "adelie.state.gaussian_pin_cov", false]], "gaussian_pin_naive() (in module adelie.state)": [[93, "adelie.state.gaussian_pin_naive", false]], "glm_naive() (in module adelie.state)": [[94, "adelie.state.glm_naive", false]], "glmbase64 (class in adelie.adelie_core.glm)": [[4, "adelie.adelie_core.glm.GlmBase64", false]], "glmbinomiallogit64 (class in adelie.adelie_core.glm)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64", false]], "glmbinomialprobit64 (class in adelie.adelie_core.glm)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64", false]], "glmcox64 (class in adelie.adelie_core.glm)": [[7, "adelie.adelie_core.glm.GlmCox64", false]], "glmgaussian64 (class in adelie.adelie_core.glm)": [[8, "adelie.adelie_core.glm.GlmGaussian64", false]], "glmmultibase64 (class in adelie.adelie_core.glm)": [[9, "adelie.adelie_core.glm.GlmMultiBase64", false]], "glmmultigaussian64 (class in adelie.adelie_core.glm)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64", false]], "glmmultinomial64 (class in adelie.adelie_core.glm)": [[11, "adelie.adelie_core.glm.GlmMultinomial64", false]], "glmpoisson64 (class in adelie.adelie_core.glm)": [[12, "adelie.adelie_core.glm.GlmPoisson64", false]], "grad (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.grad", false]], "grad (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.grad", false]], "grad (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.grad", false]], "grad (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.grad", false]], "grad (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.grad", false]], "gradient() (adelie.adelie_core.constraint.constraintbase64 method)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.gradient", false]], "gradient() (adelie.adelie_core.constraint.constraintlowerupper64 method)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmbase64 method)": [[4, "adelie.adelie_core.glm.GlmBase64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmbinomiallogit64 method)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmbinomialprobit64 method)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmcox64 method)": [[7, "adelie.adelie_core.glm.GlmCox64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmgaussian64 method)": [[8, "adelie.adelie_core.glm.GlmGaussian64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmmultibase64 method)": [[9, "adelie.adelie_core.glm.GlmMultiBase64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmmultigaussian64 method)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmmultinomial64 method)": [[11, "adelie.adelie_core.glm.GlmMultinomial64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmpoisson64 method)": [[12, "adelie.adelie_core.glm.GlmPoisson64.gradient", false]], "gradient_norms() (in module adelie.diagnostic)": [[56, "adelie.diagnostic.gradient_norms", false]], "gradient_scores() (in module adelie.diagnostic)": [[57, "adelie.diagnostic.gradient_scores", false]], "gradients() (in module adelie.diagnostic)": [[58, "adelie.diagnostic.gradients", false]], "group_sizes (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f attribute)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.group_sizes", false]], "group_sizes (adelie.adelie_core.matrix.matrixnaiveonehotdense64f attribute)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.group_sizes", false]], "group_type (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.group_type", false]], "group_type (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.group_type", false]], "groups (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f attribute)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.groups", false]], "groups (adelie.adelie_core.matrix.matrixnaiveonehotdense64f attribute)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.groups", false]], "groups (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.groups", false]], "groups (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.groups", false]], "groups (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.groups", false]], "groups (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.groups", false]], "groups (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.groups", false]], "groups (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.groups", false]], "groups (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.groups", false]], "grpnet() (in module adelie.solver)": [[89, "adelie.solver.grpnet", false]], "hessian() (adelie.adelie_core.glm.glmbase64 method)": [[4, "adelie.adelie_core.glm.GlmBase64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmbinomiallogit64 method)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmbinomialprobit64 method)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmcox64 method)": [[7, "adelie.adelie_core.glm.GlmCox64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmgaussian64 method)": [[8, "adelie.adelie_core.glm.GlmGaussian64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmmultibase64 method)": [[9, "adelie.adelie_core.glm.GlmMultiBase64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmmultigaussian64 method)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmmultinomial64 method)": [[11, "adelie.adelie_core.glm.GlmMultinomial64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmpoisson64 method)": [[12, "adelie.adelie_core.glm.GlmPoisson64.hessian", false]], "hessian_min (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.hessian_min", false]], "hessian_min_def (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.hessian_min_def", false]], "impute (adelie.io.snp_unphased attribute)": [[74, "adelie.io.snp_unphased.impute", false]], "interaction() (in module adelie.matrix)": [[79, "adelie.matrix.interaction", false]], "intercept (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.intercept", false]], "intercept (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.intercept", false]], "intercept (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.intercept", false]], "intercept (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.intercept", false]], "intercept (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.intercept", false]], "intercept (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.intercept", false]], "intercept (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.intercept", false]], "intercepts (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.intercepts", false]], "intercepts (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.intercepts", false]], "intercepts (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, 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(adelie.adelie_core.glm.glmbinomialprobit64 method)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64.inv_hessian_gradient", false]], "inv_hessian_gradient() (adelie.adelie_core.glm.glmcox64 method)": [[7, "adelie.adelie_core.glm.GlmCox64.inv_hessian_gradient", false]], "inv_hessian_gradient() (adelie.adelie_core.glm.glmgaussian64 method)": [[8, "adelie.adelie_core.glm.GlmGaussian64.inv_hessian_gradient", false]], "inv_hessian_gradient() (adelie.adelie_core.glm.glmmultibase64 method)": [[9, "adelie.adelie_core.glm.GlmMultiBase64.inv_hessian_gradient", false]], "inv_hessian_gradient() (adelie.adelie_core.glm.glmmultigaussian64 method)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64.inv_hessian_gradient", false]], "inv_hessian_gradient() (adelie.adelie_core.glm.glmmultinomial64 method)": [[11, "adelie.adelie_core.glm.GlmMultinomial64.inv_hessian_gradient", false]], "inv_hessian_gradient() (adelie.adelie_core.glm.glmpoisson64 method)": [[12, "adelie.adelie_core.glm.GlmPoisson64.inv_hessian_gradient", false]], "irls_max_iters (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.irls_max_iters", false]], "irls_max_iters (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.irls_max_iters", false]], "irls_tol (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.irls_tol", false]], "irls_tol (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.irls_tol", false]], "is_multi (adelie.adelie_core.glm.glmbase64 attribute)": [[4, "adelie.adelie_core.glm.GlmBase64.is_multi", false]], "is_multi (adelie.adelie_core.glm.glmbinomiallogit64 attribute)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64.is_multi", false]], "is_multi (adelie.adelie_core.glm.glmbinomialprobit64 attribute)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64.is_multi", false]], "is_multi (adelie.adelie_core.glm.glmcox64 attribute)": [[7, "adelie.adelie_core.glm.GlmCox64.is_multi", false]], "is_multi (adelie.adelie_core.glm.glmgaussian64 attribute)": [[8, "adelie.adelie_core.glm.GlmGaussian64.is_multi", false]], "is_multi (adelie.adelie_core.glm.glmmultibase64 attribute)": [[9, "adelie.adelie_core.glm.GlmMultiBase64.is_multi", false]], "is_multi (adelie.adelie_core.glm.glmmultigaussian64 attribute)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64.is_multi", false]], "is_multi (adelie.adelie_core.glm.glmmultinomial64 attribute)": [[11, "adelie.adelie_core.glm.GlmMultinomial64.is_multi", false]], "is_multi (adelie.adelie_core.glm.glmpoisson64 attribute)": [[12, "adelie.adelie_core.glm.GlmPoisson64.is_multi", false]], "is_read (adelie.io.snp_phased_ancestry attribute)": [[73, "adelie.io.snp_phased_ancestry.is_read", false]], "is_read (adelie.io.snp_unphased attribute)": [[74, "adelie.io.snp_unphased.is_read", false]], "is_symmetric (adelie.adelie_core.glm.glmbase64 attribute)": [[4, "adelie.adelie_core.glm.GlmBase64.is_symmetric", false]], "is_symmetric (adelie.adelie_core.glm.glmbinomiallogit64 attribute)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64.is_symmetric", false]], "is_symmetric (adelie.adelie_core.glm.glmbinomialprobit64 attribute)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64.is_symmetric", false]], "is_symmetric (adelie.adelie_core.glm.glmcox64 attribute)": [[7, "adelie.adelie_core.glm.GlmCox64.is_symmetric", false]], "is_symmetric (adelie.adelie_core.glm.glmgaussian64 attribute)": [[8, "adelie.adelie_core.glm.GlmGaussian64.is_symmetric", false]], "is_symmetric (adelie.adelie_core.glm.glmmultibase64 attribute)": [[9, "adelie.adelie_core.glm.GlmMultiBase64.is_symmetric", false]], "is_symmetric (adelie.adelie_core.glm.glmmultigaussian64 attribute)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64.is_symmetric", false]], "is_symmetric (adelie.adelie_core.glm.glmmultinomial64 attribute)": [[11, "adelie.adelie_core.glm.GlmMultinomial64.is_symmetric", false]], "is_symmetric (adelie.adelie_core.glm.glmpoisson64 attribute)": [[12, "adelie.adelie_core.glm.GlmPoisson64.is_symmetric", false]], "iters (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.iters", false]], "iters (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.iters", false]], "kronecker_eye() (in module adelie.matrix)": [[80, "adelie.matrix.kronecker_eye", false]], "lazy_cov() (in module adelie.matrix)": [[81, "adelie.matrix.lazy_cov", false]], "lmda (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.lmda", false]], "lmda (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.lmda", false]], "lmda (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.lmda", false]], "lmda (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.lmda", false]], "lmda (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.lmda", false]], "lmda_max (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.lmda_max", false]], "lmda_max (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.lmda_max", false]], "lmda_max (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.lmda_max", false]], "lmda_max (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.lmda_max", false]], "lmda_max 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"adelie.adelie_core.state.StateGlmNaive64.newton_max_iters", false]], "newton_max_iters (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.newton_max_iters", false]], "newton_max_iters (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.newton_max_iters", false]], "newton_tol (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.newton_tol", false]], "newton_tol (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.newton_tol", false]], "newton_tol (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.newton_tol", false]], "newton_tol (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.newton_tol", false]], 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(adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.offsets", false]], "offsets (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.offsets", false]], "one_hot() (in module adelie.matrix)": [[82, "adelie.matrix.one_hot", false]], "pb_symbol (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.pb_symbol", false]], "pb_symbol_def (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.pb_symbol_def", false]], "penalty (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.penalty", false]], "penalty (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.penalty", false]], "penalty (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.penalty", false]], "penalty (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.penalty", false]], "penalty (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.penalty", false]], "penalty (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.penalty", false]], "penalty (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.penalty", false]], "pivot_slack_ratio (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.pivot_slack_ratio", false]], "pivot_slack_ratio (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.pivot_slack_ratio", false]], "pivot_slack_ratio (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.pivot_slack_ratio", false]], "pivot_slack_ratio (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.pivot_slack_ratio", false]], "pivot_slack_ratio (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.pivot_slack_ratio", false]], "pivot_subset_min (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.pivot_subset_min", false]], "pivot_subset_min (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.pivot_subset_min", false]], "pivot_subset_min (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.pivot_subset_min", false]], "pivot_subset_min (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.pivot_subset_min", false]], "pivot_subset_min (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.pivot_subset_min", false]], "pivot_subset_ratio (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.pivot_subset_ratio", false]], "pivot_subset_ratio (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.pivot_subset_ratio", false]], "pivot_subset_ratio (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.pivot_subset_ratio", false]], "pivot_subset_ratio (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.pivot_subset_ratio", false]], "pivot_subset_ratio (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.pivot_subset_ratio", false]], "plot_benchmark() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_benchmark", false]], "plot_benchmark() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_benchmark", false]], "plot_benchmark() (in module adelie.diagnostic)": [[60, "adelie.diagnostic.plot_benchmark", false]], "plot_coefficients() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_coefficients", false]], "plot_coefficients() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_coefficients", false]], "plot_coefficients() (in module adelie.diagnostic)": [[61, "adelie.diagnostic.plot_coefficients", false]], "plot_devs() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_devs", false]], "plot_devs() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_devs", false]], "plot_devs() (in module adelie.diagnostic)": [[62, "adelie.diagnostic.plot_devs", false]], "plot_kkt() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_kkt", false]], "plot_kkt() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_kkt", false]], "plot_kkt() (in module adelie.diagnostic)": [[63, "adelie.diagnostic.plot_kkt", false]], "plot_loss() (adelie.cv.cvgrpnetresult method)": [[47, "adelie.cv.CVGrpnetResult.plot_loss", false]], "plot_set_sizes() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_set_sizes", false]], "plot_set_sizes() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_set_sizes", false]], "plot_set_sizes() (in module adelie.diagnostic)": [[64, "adelie.diagnostic.plot_set_sizes", false]], "poisson() (in module adelie.glm)": [[72, "adelie.glm.poisson", false]], "predict() (in module adelie.diagnostic)": [[65, "adelie.diagnostic.predict", false]], "primal_size (adelie.adelie_core.constraint.constraintbase64 attribute)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.primal_size", false]], "primal_size (adelie.adelie_core.constraint.constraintlowerupper64 attribute)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.primal_size", false]], "primals() (adelie.adelie_core.constraint.constraintbase64 method)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.primals", false]], "primals() (adelie.adelie_core.constraint.constraintlowerupper64 method)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.primals", false]], "project() (adelie.adelie_core.constraint.constraintbase64 method)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.project", false]], "project() (adelie.adelie_core.constraint.constraintlowerupper64 method)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.project", false]], "rdev_tol 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\ No newline at end of file
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adelie.adelie_core.constraint)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64", false]], "constraints (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.constraints", false]], "constraints (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.constraints", false]], "constraints (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.constraints", false]], "constraints (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.constraints", false]], "constraints (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.constraints", false]], "constraints (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.constraints", false]], 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(adelie.adelie_core.matrix.matrixnaivekroneckereyedense64f method)": [[24, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F.cov", false]], "cov() (adelie.adelie_core.matrix.matrixnaiveonehotdense64f method)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.cov", false]], "cov() (adelie.adelie_core.matrix.matrixnaiverconcatenate64 method)": [[26, "adelie.adelie_core.matrix.MatrixNaiveRConcatenate64.cov", false]], "cov() (adelie.adelie_core.matrix.matrixnaiversubset64 method)": [[27, "adelie.adelie_core.matrix.MatrixNaiveRSubset64.cov", false]], "cov() (adelie.adelie_core.matrix.matrixnaivesnpphasedancestry64 method)": [[28, "adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64.cov", false]], "cov() (adelie.adelie_core.matrix.matrixnaivesnpunphased64 method)": [[29, "adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64.cov", false]], "cov() (adelie.adelie_core.matrix.matrixnaivesparse64f method)": [[30, "adelie.adelie_core.matrix.MatrixNaiveSparse64F.cov", false]], "cov() (adelie.adelie_core.matrix.matrixnaivestandardize64 method)": [[31, "adelie.adelie_core.matrix.MatrixNaiveStandardize64.cov", false]], "cox() (in module adelie.glm)": [[68, "adelie.glm.cox", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivebase64 method)": [[18, "adelie.adelie_core.matrix.MatrixNaiveBase64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivecconcatenate64 method)": [[19, "adelie.adelie_core.matrix.MatrixNaiveCConcatenate64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivecsubset64 method)": [[20, "adelie.adelie_core.matrix.MatrixNaiveCSubset64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivedense64f method)": [[21, "adelie.adelie_core.matrix.MatrixNaiveDense64F.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f method)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivekroneckereye64 method)": [[23, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivekroneckereyedense64f method)": [[24, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaiveonehotdense64f method)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaiverconcatenate64 method)": [[26, "adelie.adelie_core.matrix.MatrixNaiveRConcatenate64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaiversubset64 method)": [[27, "adelie.adelie_core.matrix.MatrixNaiveRSubset64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivesnpphasedancestry64 method)": [[28, "adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivesnpunphased64 method)": [[29, "adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivesparse64f method)": [[30, "adelie.adelie_core.matrix.MatrixNaiveSparse64F.ctmul", false]], "ctmul() (adelie.adelie_core.matrix.matrixnaivestandardize64 method)": [[31, "adelie.adelie_core.matrix.MatrixNaiveStandardize64.ctmul", false]], "cv_grpnet() (in module adelie.cv)": [[48, "adelie.cv.cv_grpnet", false]], "cvgrpnetresult (class in adelie.cv)": [[47, "adelie.cv.CVGrpnetResult", false]], "dbeta_tol (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.dbeta_tol", false]], "dbeta_tol_def (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.dbeta_tol_def", false]], "ddev_tol (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.ddev_tol", false]], "ddev_tol (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.ddev_tol", false]], "dense() (in module adelie.data)": [[49, "adelie.data.dense", false]], "dense() (in module adelie.matrix)": [[77, "adelie.matrix.dense", false]], "devs (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.devs", false]], "devs (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.devs", false]], "devs (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.devs", false]], "devs (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.devs", false]], "devs (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.devs", false]], "diagnostic() (in module adelie.diagnostic)": [[55, "adelie.diagnostic.diagnostic", false]], "diagnosticcov (class in adelie.diagnostic)": [[52, "adelie.diagnostic.DiagnosticCov", false]], "diagnosticnaive (class in adelie.diagnostic)": [[53, "adelie.diagnostic.DiagnosticNaive", false]], "dual_size (adelie.adelie_core.constraint.constraintbase64 attribute)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.dual_size", false]], "dual_size (adelie.adelie_core.constraint.constraintlowerupper64 attribute)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.dual_size", false]], "duals() (adelie.adelie_core.constraint.constraintbase64 method)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.duals", false]], "duals() (adelie.adelie_core.constraint.constraintlowerupper64 method)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.duals", false]], "eager_cov() (in module adelie.matrix)": [[78, "adelie.matrix.eager_cov", false]], "early_exit (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.early_exit", false]], "early_exit (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.early_exit", false]], "early_exit (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.early_exit", false]], "early_exit (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.early_exit", false]], "early_exit (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.early_exit", false]], "endian (adelie.io.snp_phased_ancestry attribute)": [[73, "adelie.io.snp_phased_ancestry.endian", false]], "endian (adelie.io.snp_unphased attribute)": [[74, "adelie.io.snp_unphased.endian", false]], "eta (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.eta", false]], "eta (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.eta", false]], "fit() (adelie.cv.cvgrpnetresult method)": [[47, "adelie.cv.CVGrpnetResult.fit", false]], "gaussian() (in module adelie.glm)": [[69, "adelie.glm.gaussian", false]], "gaussian_cov() (in module adelie.solver)": [[88, "adelie.solver.gaussian_cov", false]], "gaussian_cov() (in module adelie.state)": [[90, "adelie.state.gaussian_cov", false]], "gaussian_naive() (in module adelie.state)": [[91, "adelie.state.gaussian_naive", false]], "gaussian_pin_cov() (in module adelie.state)": [[92, "adelie.state.gaussian_pin_cov", false]], "gaussian_pin_naive() (in module adelie.state)": [[93, "adelie.state.gaussian_pin_naive", false]], "glm_naive() (in module adelie.state)": [[94, "adelie.state.glm_naive", false]], "glmbase64 (class in adelie.adelie_core.glm)": [[4, "adelie.adelie_core.glm.GlmBase64", false]], "glmbinomiallogit64 (class in adelie.adelie_core.glm)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64", false]], "glmbinomialprobit64 (class in adelie.adelie_core.glm)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64", false]], "glmcox64 (class in adelie.adelie_core.glm)": [[7, "adelie.adelie_core.glm.GlmCox64", false]], "glmgaussian64 (class in adelie.adelie_core.glm)": [[8, "adelie.adelie_core.glm.GlmGaussian64", false]], "glmmultibase64 (class in adelie.adelie_core.glm)": [[9, "adelie.adelie_core.glm.GlmMultiBase64", false]], "glmmultigaussian64 (class in adelie.adelie_core.glm)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64", false]], "glmmultinomial64 (class in adelie.adelie_core.glm)": [[11, "adelie.adelie_core.glm.GlmMultinomial64", false]], "glmpoisson64 (class in adelie.adelie_core.glm)": [[12, "adelie.adelie_core.glm.GlmPoisson64", false]], "grad (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.grad", false]], "grad (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.grad", false]], "grad (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.grad", false]], "grad (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.grad", false]], "grad (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.grad", false]], "gradient() (adelie.adelie_core.constraint.constraintbase64 method)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.gradient", false]], "gradient() (adelie.adelie_core.constraint.constraintlowerupper64 method)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmbase64 method)": [[4, "adelie.adelie_core.glm.GlmBase64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmbinomiallogit64 method)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmbinomialprobit64 method)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmcox64 method)": [[7, "adelie.adelie_core.glm.GlmCox64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmgaussian64 method)": [[8, "adelie.adelie_core.glm.GlmGaussian64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmmultibase64 method)": [[9, "adelie.adelie_core.glm.GlmMultiBase64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmmultigaussian64 method)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmmultinomial64 method)": [[11, "adelie.adelie_core.glm.GlmMultinomial64.gradient", false]], "gradient() (adelie.adelie_core.glm.glmpoisson64 method)": [[12, "adelie.adelie_core.glm.GlmPoisson64.gradient", false]], "gradient_norms() (in module adelie.diagnostic)": [[56, "adelie.diagnostic.gradient_norms", false]], "gradient_scores() (in module adelie.diagnostic)": [[57, "adelie.diagnostic.gradient_scores", false]], "gradients() (in module adelie.diagnostic)": [[58, "adelie.diagnostic.gradients", false]], "group_sizes (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f attribute)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.group_sizes", false]], "group_sizes (adelie.adelie_core.matrix.matrixnaiveonehotdense64f attribute)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.group_sizes", false]], "group_sizes (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.group_sizes", false]], "group_sizes 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"adelie.adelie_core.state.StateGaussianCov64.groups", false]], "groups (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.groups", false]], "groups (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.groups", false]], "groups (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.groups", false]], "groups (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.groups", false]], "groups (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.groups", false]], "groups (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.groups", false]], "grpnet() (in module adelie.solver)": [[89, "adelie.solver.grpnet", false]], "hessian() (adelie.adelie_core.glm.glmbase64 method)": [[4, "adelie.adelie_core.glm.GlmBase64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmbinomiallogit64 method)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmbinomialprobit64 method)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmcox64 method)": [[7, "adelie.adelie_core.glm.GlmCox64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmgaussian64 method)": [[8, "adelie.adelie_core.glm.GlmGaussian64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmmultibase64 method)": [[9, "adelie.adelie_core.glm.GlmMultiBase64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmmultigaussian64 method)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmmultinomial64 method)": [[11, "adelie.adelie_core.glm.GlmMultinomial64.hessian", false]], "hessian() (adelie.adelie_core.glm.glmpoisson64 method)": [[12, "adelie.adelie_core.glm.GlmPoisson64.hessian", false]], "hessian_min (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.hessian_min", false]], "hessian_min_def (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.hessian_min_def", false]], "impute (adelie.io.snp_unphased attribute)": [[74, "adelie.io.snp_unphased.impute", false]], "interaction() (in module adelie.matrix)": [[79, "adelie.matrix.interaction", false]], "intercept (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.intercept", false]], "intercept (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.intercept", false]], "intercept (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.intercept", false]], "intercept 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(adelie.adelie_core.matrix.matrixnaivecsubset64 method)": [[20, "adelie.adelie_core.matrix.MatrixNaiveCSubset64.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaivedense64f method)": [[21, "adelie.adelie_core.matrix.MatrixNaiveDense64F.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f method)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaivekroneckereye64 method)": [[23, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaivekroneckereyedense64f method)": [[24, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaiveonehotdense64f method)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaiverconcatenate64 method)": [[26, "adelie.adelie_core.matrix.MatrixNaiveRConcatenate64.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaiversubset64 method)": [[27, "adelie.adelie_core.matrix.MatrixNaiveRSubset64.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaivesnpphasedancestry64 method)": [[28, "adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaivesnpunphased64 method)": [[29, "adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaivesparse64f method)": [[30, "adelie.adelie_core.matrix.MatrixNaiveSparse64F.mul", false]], "mul() (adelie.adelie_core.matrix.matrixnaivestandardize64 method)": [[31, "adelie.adelie_core.matrix.MatrixNaiveStandardize64.mul", false]], "multi_intercept (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.multi_intercept", false]], "multi_intercept (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.multi_intercept", false]], "multigaussian() (in module adelie.glm)": [[70, "adelie.glm.multigaussian", false]], "multigaussian_naive() (in module adelie.state)": [[95, "adelie.state.multigaussian_naive", false]], "multiglm_naive() (in module adelie.state)": [[96, "adelie.state.multiglm_naive", false]], "multinomial() (in module adelie.glm)": [[71, "adelie.glm.multinomial", false]], "n_classes (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.n_classes", false]], "n_threads (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.n_threads", false]], "n_threads (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.n_threads", false]], "n_threads (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.n_threads", false]], "n_threads (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.n_threads", false]], "n_threads (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.n_threads", false]], "n_threads (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.n_threads", false]], "n_threads (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.n_threads", false]], "n_valid_solutions (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.n_valid_solutions", false]], "n_valid_solutions (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.n_valid_solutions", false]], "n_valid_solutions (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.n_valid_solutions", false]], "n_valid_solutions (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.n_valid_solutions", false]], "n_valid_solutions (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.n_valid_solutions", false]], "name (adelie.adelie_core.glm.glmbase64 attribute)": [[4, "adelie.adelie_core.glm.GlmBase64.name", false]], "name (adelie.adelie_core.glm.glmbinomiallogit64 attribute)": [[5, "adelie.adelie_core.glm.GlmBinomialLogit64.name", false]], "name (adelie.adelie_core.glm.glmbinomialprobit64 attribute)": [[6, "adelie.adelie_core.glm.GlmBinomialProbit64.name", false]], "name (adelie.adelie_core.glm.glmcox64 attribute)": [[7, "adelie.adelie_core.glm.GlmCox64.name", false]], "name (adelie.adelie_core.glm.glmgaussian64 attribute)": [[8, "adelie.adelie_core.glm.GlmGaussian64.name", false]], "name (adelie.adelie_core.glm.glmmultibase64 attribute)": [[9, "adelie.adelie_core.glm.GlmMultiBase64.name", false]], "name (adelie.adelie_core.glm.glmmultigaussian64 attribute)": [[10, "adelie.adelie_core.glm.GlmMultiGaussian64.name", false]], "name (adelie.adelie_core.glm.glmmultinomial64 attribute)": [[11, "adelie.adelie_core.glm.GlmMultinomial64.name", false]], "name (adelie.adelie_core.glm.glmpoisson64 attribute)": [[12, "adelie.adelie_core.glm.GlmPoisson64.name", false]], "ndim (adelie.adelie_core.matrix.matrixcovbase64 attribute)": [[13, "adelie.adelie_core.matrix.MatrixCovBase64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixcovblockdiag64 attribute)": [[14, "adelie.adelie_core.matrix.MatrixCovBlockDiag64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixcovdense64f attribute)": [[15, "adelie.adelie_core.matrix.MatrixCovDense64F.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixcovlazycov64f attribute)": [[16, "adelie.adelie_core.matrix.MatrixCovLazyCov64F.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixcovsparse64f attribute)": [[17, "adelie.adelie_core.matrix.MatrixCovSparse64F.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivebase64 attribute)": [[18, "adelie.adelie_core.matrix.MatrixNaiveBase64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivecconcatenate64 attribute)": [[19, "adelie.adelie_core.matrix.MatrixNaiveCConcatenate64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivecsubset64 attribute)": [[20, "adelie.adelie_core.matrix.MatrixNaiveCSubset64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivedense64f attribute)": [[21, "adelie.adelie_core.matrix.MatrixNaiveDense64F.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaiveinteractiondense64f attribute)": [[22, "adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivekroneckereye64 attribute)": [[23, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivekroneckereyedense64f attribute)": [[24, "adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaiveonehotdense64f attribute)": [[25, "adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaiverconcatenate64 attribute)": [[26, "adelie.adelie_core.matrix.MatrixNaiveRConcatenate64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaiversubset64 attribute)": [[27, "adelie.adelie_core.matrix.MatrixNaiveRSubset64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivesnpphasedancestry64 attribute)": [[28, "adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivesnpunphased64 attribute)": [[29, "adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivesparse64f attribute)": [[30, "adelie.adelie_core.matrix.MatrixNaiveSparse64F.ndim", false]], "ndim (adelie.adelie_core.matrix.matrixnaivestandardize64 attribute)": [[31, "adelie.adelie_core.matrix.MatrixNaiveStandardize64.ndim", false]], "newton_max_iters (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.newton_max_iters", false]], "newton_max_iters (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.newton_max_iters", false]], "newton_max_iters (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.newton_max_iters", false]], "newton_max_iters (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.newton_max_iters", false]], "newton_max_iters (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.newton_max_iters", false]], "newton_max_iters (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.newton_max_iters", false]], "newton_max_iters (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.newton_max_iters", false]], "newton_tol (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.newton_tol", false]], "newton_tol (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.newton_tol", false]], "newton_tol (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, "adelie.adelie_core.state.StateGaussianPinCov64.newton_tol", false]], "newton_tol (adelie.adelie_core.state.stategaussianpinnaive64 attribute)": [[35, "adelie.adelie_core.state.StateGaussianPinNaive64.newton_tol", false]], 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(adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.offsets", false]], "offsets (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.offsets", false]], "one_hot() (in module adelie.matrix)": [[82, "adelie.matrix.one_hot", false]], "pb_symbol (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.pb_symbol", false]], "pb_symbol_def (adelie.adelie_core.configs.configs attribute)": [[1, "adelie.adelie_core.configs.Configs.pb_symbol_def", false]], "penalty (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.penalty", false]], "penalty (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.penalty", false]], "penalty (adelie.adelie_core.state.stategaussianpincov64 attribute)": [[34, 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(adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.pivot_slack_ratio", false]], "pivot_slack_ratio (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.pivot_slack_ratio", false]], "pivot_slack_ratio (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.pivot_slack_ratio", false]], "pivot_subset_min (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.pivot_subset_min", false]], "pivot_subset_min (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.pivot_subset_min", false]], "pivot_subset_min (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.pivot_subset_min", false]], "pivot_subset_min (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.pivot_subset_min", false]], "pivot_subset_min (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.pivot_subset_min", false]], "pivot_subset_ratio (adelie.adelie_core.state.stategaussiancov64 attribute)": [[32, "adelie.adelie_core.state.StateGaussianCov64.pivot_subset_ratio", false]], "pivot_subset_ratio (adelie.adelie_core.state.stategaussiannaive64 attribute)": [[33, "adelie.adelie_core.state.StateGaussianNaive64.pivot_subset_ratio", false]], "pivot_subset_ratio (adelie.adelie_core.state.stateglmnaive64 attribute)": [[36, "adelie.adelie_core.state.StateGlmNaive64.pivot_subset_ratio", false]], "pivot_subset_ratio (adelie.adelie_core.state.statemultigaussiannaive64 attribute)": [[37, "adelie.adelie_core.state.StateMultiGaussianNaive64.pivot_subset_ratio", false]], "pivot_subset_ratio (adelie.adelie_core.state.statemultiglmnaive64 attribute)": [[38, "adelie.adelie_core.state.StateMultiGlmNaive64.pivot_subset_ratio", false]], "plot_benchmark() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_benchmark", false]], "plot_benchmark() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_benchmark", false]], "plot_benchmark() (in module adelie.diagnostic)": [[60, "adelie.diagnostic.plot_benchmark", false]], "plot_coefficients() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_coefficients", false]], "plot_coefficients() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_coefficients", false]], "plot_coefficients() (in module adelie.diagnostic)": [[61, "adelie.diagnostic.plot_coefficients", false]], "plot_devs() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_devs", false]], "plot_devs() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_devs", false]], "plot_devs() (in module adelie.diagnostic)": [[62, "adelie.diagnostic.plot_devs", false]], "plot_kkt() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_kkt", false]], "plot_kkt() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_kkt", false]], "plot_kkt() (in module adelie.diagnostic)": [[63, "adelie.diagnostic.plot_kkt", false]], "plot_loss() (adelie.cv.cvgrpnetresult method)": [[47, "adelie.cv.CVGrpnetResult.plot_loss", false]], "plot_set_sizes() (adelie.diagnostic.diagnosticcov method)": [[52, "adelie.diagnostic.DiagnosticCov.plot_set_sizes", false]], "plot_set_sizes() (adelie.diagnostic.diagnosticnaive method)": [[53, "adelie.diagnostic.DiagnosticNaive.plot_set_sizes", false]], "plot_set_sizes() (in module adelie.diagnostic)": [[64, "adelie.diagnostic.plot_set_sizes", false]], "poisson() (in module adelie.glm)": [[72, "adelie.glm.poisson", false]], "predict() (in module adelie.diagnostic)": [[65, "adelie.diagnostic.predict", false]], "primal_size (adelie.adelie_core.constraint.constraintbase64 attribute)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.primal_size", false]], "primal_size (adelie.adelie_core.constraint.constraintlowerupper64 attribute)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.primal_size", false]], "primals() (adelie.adelie_core.constraint.constraintbase64 method)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.primals", false]], "primals() (adelie.adelie_core.constraint.constraintlowerupper64 method)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.primals", false]], "project() (adelie.adelie_core.constraint.constraintbase64 method)": [[2, "adelie.adelie_core.constraint.ConstraintBase64.project", false]], "project() (adelie.adelie_core.constraint.constraintlowerupper64 method)": [[3, "adelie.adelie_core.constraint.ConstraintLowerUpper64.project", false]], "rdev_tol 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\ No newline at end of file