TurkuSpacyPtBr.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "c00cbd67",
   "metadata": {},
   "outputs": [],
   "source": [
    "import os, sys;\n",
    "sys.path.append(\"/dadosDL/database/spacy/Turku-neural-parser-pipeline\")\n",
    "from tnparser.pipeline import read_pipelines, Pipeline;\n",
    "available_pipelines=read_pipelines(\"models_ptbr/pipelines.yaml\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "4ba0a353",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/rodrigo/anaconda3/envs/nlp/lib/python3.7/site-packages/pytorch_lightning/core/decorators.py:66: LightningDeprecationWarning: The `@auto_move_data` decorator is deprecated in v1.3 and will be removed in v1.5. Please use `trainer.predict` instead for inference. The decorator was applied to `predict`\n",
      "  \"The `@auto_move_data` decorator is deprecated in v1.3 and will be removed in v1.5.\"\n",
      "INFO:root:Loading model from /dadosDL/database/github/diaparserdependencygraph/models_ptbr/Tagger/best.ckpt\n",
      "Some weights of the model checkpoint at pucpr/biobertpt-all were not used when initializing BertModel: ['cls.predictions.decoder.bias', 'cls.predictions.transform.dense.bias', 'cls.predictions.transform.LayerNorm.bias', 'cls.predictions.transform.LayerNorm.weight', 'cls.predictions.decoder.weight', 'cls.predictions.transform.dense.weight', 'cls.predictions.bias']\n",
      "- This IS expected if you are initializing BertModel from the checkpoint of a model trained on another task or with another architecture (e.g. initializing a BertForSequenceClassification model from a BertForPreTraining model).\n",
      "- This IS NOT expected if you are initializing BertModel from the checkpoint of a model that you expect to be exactly identical (initializing a BertForSequenceClassification model from a BertForSequenceClassification model).\n",
      "Some weights of the model checkpoint at pucpr/biobertpt-all were not used when initializing BertModel: ['cls.predictions.decoder.bias', 'cls.predictions.transform.dense.bias', 'cls.predictions.transform.LayerNorm.bias', 'cls.predictions.transform.LayerNorm.weight', 'cls.predictions.decoder.weight', 'cls.predictions.transform.dense.weight', 'cls.predictions.bias']\n",
      "- This IS expected if you are initializing BertModel from the checkpoint of a model trained on another task or with another architecture (e.g. initializing a BertForSequenceClassification model from a BertForPreTraining model).\n",
      "- This IS NOT expected if you are initializing BertModel from the checkpoint of a model that you expect to be exactly identical (initializing a BertForSequenceClassification model from a BertForSequenceClassification model).\n",
      "INFO:root:Creating prediction layer for 'labels_feat' with 244 classes\n",
      "INFO:root:Creating prediction layer for 'labels_upos' with 18 classes\n",
      "Using bos_token, but it is not set yet.\n",
      "Using eos_token, but it is not set yet.\n",
      "INFO:root:1 sentences in the dataset.\n",
      "100%|██████████| 1/1 [00:00<00:00, 63.92it/s]\n",
      "INFO:root:Predicted 1 sentences\n"
     ]
    }
   ],
   "source": [
    "p=Pipeline(available_pipelines[\"parse_wslines_no_lemmas\"])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "7c0085b5",
   "metadata": {},
   "outputs": [],
   "source": [
    "import spacy;\n",
    "from spacy.training.converters import conllu_to_docs;\n",
    "import numpy as np;"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "e2acea24",
   "metadata": {},
   "outputs": [],
   "source": [
    "def turku2doc(parsed, retiraLinhas=4):\n",
    "    if retiraLinhas > 0:\n",
    "       splitedLines = parsed.split('\\n');\n",
    "       conlluText = '\\n'.join(splitedLines[4:])\n",
    "    else:\n",
    "       conlluText = parsed; \n",
    "    docs = conllu_to_docs(conlluText);\n",
    "    doc = next(docs, None);\n",
    "    return doc;\n",
    "    \n",
    "def doc2text(doc):\n",
    "    result = '';\n",
    "    for token in doc:\n",
    "#        result = result + token.text + token.whitespace_;\n",
    "        result = result + ' ' + token.text;\n",
    "    return result;\n",
    "\n",
    "def svg2PNG(doc, outFile, style='dep', linux = True):\n",
    "   from pathlib import Path;\n",
    "   svgFile = os.path.splitext(outFile)[0] + '.svg'; \n",
    "\n",
    "   svg = spacy.displacy.render(doc, style=style, jupyter=False);\n",
    "   output_path = Path(svgFile);\n",
    "   output_path.open(\"w\", encoding=\"utf-8\").write(svg);\n",
    "   pngfile = os.path.splitext(outFile)[0] + '.png';\n",
    "   \n",
    "   if linux:\n",
    "      os.system('inkscape -e %s %s' % (pngfile, svgFile)); \n",
    "   else: # windows\n",
    "      cmd = '\"C:\\\\Program Files\\\\Inkscape\\\\bin\\\\inkscape.com\" -o \"%s\" %s' % (outFile, svgFile);\n",
    "      bat = [cmd];\n",
    "      saveList(bat, 'temp.bat');\n",
    "      os.system('temp.bat');\n",
    " "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "c3cf2ba6",
   "metadata": {},
   "outputs": [],
   "source": [
    "nlp = spacy.load(\"pt_core_news_sm\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "id": "9e0cd8af",
   "metadata": {},
   "outputs": [],
   "source": [
    "texto = 'Há uma imagem nodular mediastinal, adjacente à veia cava superior / átrio direito, em contiguidade com a massa do lobo superior direito, medindo 1,5 x 1,5 cm, que pode representar linfonodomegalia ou extensão tumoral';"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "74c771c7",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\u001b[38;5;4mℹ Grouping every 10 sentences into a document.\u001b[0m\n"
     ]
    },
    {
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       "    </text>\n",
       "    <path class=\"displacy-arrowhead\" d=\"M6315.0,791.5 L6323.0,779.5 6307.0,779.5\" fill=\"currentColor\"/>\n",
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       "\n",
       "<g class=\"displacy-arrow\">\n",
       "    <path class=\"displacy-arc\" id=\"arrow-8d855795b8e642e69ffabfc72298cb12-0-36\" stroke-width=\"2px\" d=\"M6370,789.5 C6370,702.0 6485.0,702.0 6485.0,789.5\" fill=\"none\" stroke=\"currentColor\"/>\n",
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       "    </text>\n",
       "    <path class=\"displacy-arrowhead\" d=\"M6485.0,791.5 L6493.0,779.5 6477.0,779.5\" fill=\"currentColor\"/>\n",
       "</g>\n",
       "</svg></span>"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "docSpacy = nlp(texto); \n",
    "spacyText = doc2text(docSpacy); \n",
    "parsed=p.parse(spacyText);\n",
    "doc = turku2doc(parsed, 0);\n",
    "\n",
    "spacy.displacy.render(doc, style='dep');     \n",
    "svg2PNG(doc, 'diaparser.svg');"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "id": "1c265431",
   "metadata": {},
   "outputs": [
    {
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       "\n",
       "<text class=\"displacy-token\" fill=\"currentColor\" text-anchor=\"middle\" y=\"659.5\">\n",
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       "\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"1275\">NOUN</tspan>\n",
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       "\n",
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       "\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"1800\">NOUN</tspan>\n",
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       "\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"1975\">ADJ</tspan>\n",
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       "\n",
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       "\n",
       "<text class=\"displacy-token\" fill=\"currentColor\" text-anchor=\"middle\" y=\"659.5\">\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"2325\">NOUN</tspan>\n",
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       "\n",
       "<text class=\"displacy-token\" fill=\"currentColor\" text-anchor=\"middle\" y=\"659.5\">\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"2850\">NOUN</tspan>\n",
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       "\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"3200\">NOUN</tspan>\n",
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       "\n",
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       "\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"3550\">NOUN</tspan>\n",
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       "\n",
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       "\n",
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       "\n",
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       "\n",
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       "\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"4775\">VERB</tspan>\n",
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       "\n",
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       "\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"5125\">NOUN</tspan>\n",
       "</text>\n",
       "\n",
       "<text class=\"displacy-token\" fill=\"currentColor\" text-anchor=\"middle\" y=\"659.5\">\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"5300\">CCONJ</tspan>\n",
       "</text>\n",
       "\n",
       "<text class=\"displacy-token\" fill=\"currentColor\" text-anchor=\"middle\" y=\"659.5\">\n",
       "    <tspan class=\"displacy-word\" fill=\"currentColor\" x=\"5475\">extensão</tspan>\n",
       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"5475\">NOUN</tspan>\n",
       "</text>\n",
       "\n",
       "<text class=\"displacy-token\" fill=\"currentColor\" text-anchor=\"middle\" y=\"659.5\">\n",
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       "    <tspan class=\"displacy-tag\" dy=\"2em\" fill=\"currentColor\" x=\"5650\">ADJ</tspan>\n",
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       "\n",
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   ],
   "source": [
    "docspacy = nlp(texto);\n",
    "spacy.displacy.render(docspacy, style='dep');  \n",
    "svg2PNG(docspacy, 'spacy.svg');"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "id": "2a57e4d0",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "1\tHá\t_\tAUX\t_\tMood=Ind|Number=Sing|Person=3|Tense=Pres|VerbForm=Fin\t0\troot\t_\t_\n",
      "2\tuma\t_\tDET\t_\tDefinite=Ind|Gender=Fem|Number=Sing|PronType=Art\t3\tdet\t_\t_\n",
      "3\timagem\t_\tNOUN\t_\tGender=Fem|Number=Sing\t1\tobj\t_\t_\n",
      "4\tnodular\t_\tADJ\t_\tGender=Fem|Number=Sing\t3\tamod\t_\t_\n",
      "5\tmediastinal\t_\tADJ\t_\tGender=Fem|Number=Sing\t3\tamod\t_\t_\n",
      "6\t,\t_\tPUNCT\t_\t_\t7\tpunct\t_\t_\n",
      "7\tadjacente\t_\tVERB\t_\tGender=Fem|Number=Sing\t3\tamod\t_\t_\n",
      "8\tà\t_\tDET\t_\t_\t9\tcase\t_\t_\n",
      "9\tveia\t_\tNOUN\t_\tGender=Fem|Number=Sing\t7\tobl\t_\t_\n",
      "10\tcava\t_\tNOUN\t_\tGender=Fem|Number=Sing\t9\tamod\t_\t_\n",
      "11\tsuperior\t_\tADJ\t_\tGender=Fem|Number=Sing\t9\tamod\t_\t_\n",
      "12\t/\t_\tPUNCT\t_\t_\t13\tpunct\t_\t_\n",
      "13\tátrio\t_\tNOUN\t_\tGender=Masc|Number=Sing\t9\tconj\t_\t_\n",
      "14\tdireito\t_\tADJ\t_\tGender=Masc|Number=Sing\t13\tamod\t_\t_\n",
      "15\t,\t_\tPUNCT\t_\t_\t7\tpunct\t_\t_\n",
      "16\tem\t_\tADP\t_\t_\t17\tcase\t_\t_\n",
      "17\tcontiguidade\t_\tNOUN\t_\tGender=Fem|Number=Sing\t1\tobl\t_\t_\n",
      "18\tcom\t_\tADP\t_\t_\t20\tcase\t_\t_\n",
      "19\ta\t_\tDET\t_\tDefinite=Def|Gender=Fem|Number=Sing|PronType=Art\t20\tdet\t_\t_\n",
      "20\tmassa\t_\tNOUN\t_\tGender=Fem|Number=Sing\t17\tnmod\t_\t_\n",
      "21\tdo\t_\tADP\t_\t_\t22\tcase\t_\t_\n",
      "22\tlobo\t_\tNOUN\t_\tGender=Masc|Number=Sing\t20\tnmod\t_\t_\n",
      "23\tsuperior\t_\tADJ\t_\tGender=Masc|Number=Sing\t22\tamod\t_\t_\n",
      "24\tdireito\t_\tADJ\t_\tGender=Masc|Number=Sing\t22\tamod\t_\t_\n",
      "25\t,\t_\tPUNCT\t_\t_\t26\tpunct\t_\t_\n",
      "26\tmedindo\t_\tVERB\t_\tVerbForm=Ger\t20\tacl\t_\t_\n",
      "27\t1,5\t_\tNUM\t_\tNumType=Card\t30\tnummod\t_\t_\n",
      "28\tx\t_\tADP\t_\t_\t30\tcase\t_\t_\n",
      "29\t1,5\t_\tNUM\t_\tNumType=Card\t30\tnummod\t_\t_\n",
      "30\tcm\t_\tNOUN\t_\tGender=Masc|Number=Plur\t26\tobl\t_\t_\n",
      "31\t,\t_\tPUNCT\t_\t_\t26\tpunct\t_\t_\n",
      "32\tque\t_\tPRON\t_\tGender=Fem|Number=Sing|PronType=Rel\t33\tnsubj\t_\t_\n",
      "33\tpode\t_\tVERB\t_\tMood=Ind|Number=Sing|Person=3|Tense=Pres|VerbForm=Fin\t20\tacl:relcl\t_\t_\n",
      "34\trepresentar\t_\tVERB\t_\tVerbForm=Inf\t33\txcomp\t_\t_\n",
      "35\tlinfonodomegalia\t_\tNOUN\t_\tGender=Fem|Number=Sing\t34\tobj\t_\t_\n",
      "36\tou\t_\tCCONJ\t_\t_\t37\tcc\t_\t_\n",
      "37\textensão\t_\tNOUN\t_\tGender=Fem|Number=Sing\t35\tconj\t_\t_\n",
      "38\ttumoral\t_\tADJ\t_\tGender=Fem|Number=Sing\t37\tamod\t_\t_\n",
      "\n",
      "\n"
     ]
    }
   ],
   "source": [
    "print(parsed);"
   ]
  }
 ],
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