diff --git a/.changeset/clever-peaches-do.md b/.changeset/clever-peaches-do.md new file mode 100644 index 00000000..22361fd7 --- /dev/null +++ b/.changeset/clever-peaches-do.md @@ -0,0 +1,12 @@ +--- +'@itk-viewer/remote-viewport': patch +'@itk-viewer/blosc-zarr': patch +'@itk-viewer/arcball': patch +'@itk-viewer/element': patch +'@itk-viewer/viewer': patch +'@itk-viewer/utils': patch +'@itk-viewer/vtkjs': patch +'@itk-viewer/io': patch +--- + +Add orthographic camera and zooming to 2D view. diff --git a/.prettierignore b/.prettierignore index 9721bf45..b379999a 100644 --- a/.prettierignore +++ b/.prettierignore @@ -6,3 +6,4 @@ micromamba/* venv/* packages/blosc-zarr/* !packages/blosc-zarr/bloscZarrDecompress.js +.changesets/* diff --git a/package.json b/package.json index 3867053f..ef944c47 100644 --- a/package.json +++ b/package.json @@ -18,7 +18,7 @@ "cy:component": "cypress run --component", "cy:component:chrome": "cypress run --component --browser chrome", "clean": "git clean -fdx", - "ci:publish": "pnpm publish -r --access public" + "ci:publish": "pnpm --filter=!vtk-js-transfer-function-example publish -r --access public" }, "devDependencies": { "@changesets/cli": "^2.27.1", diff --git a/packages/blosc-zarr/bloscZarrDecompress.js b/packages/blosc-zarr/bloscZarrDecompress.js index ef0d38bc..b2651e13 100644 --- a/packages/blosc-zarr/bloscZarrDecompress.js +++ b/packages/blosc-zarr/bloscZarrDecompress.js @@ -5,7 +5,7 @@ import { getPipelinesBaseUrl, getPipelineWorkerUrl, } from 'itk-wasm'; -import { getSize } from '@itk-viewer/wasm-utils/dtypeUtils.js'; +import { getSize } from '@itk-viewer/utils/dtypeUtils.js'; const cores = navigator.hardwareConcurrency ? navigator.hardwareConcurrency : 4; const numberOfWorkers = cores + Math.floor(Math.sqrt(cores)); diff --git a/packages/blosc-zarr/package.json b/packages/blosc-zarr/package.json index eb5522bf..7c5e3233 100644 --- a/packages/blosc-zarr/package.json +++ b/packages/blosc-zarr/package.json @@ -42,7 +42,7 @@ "typescript": "^5.3.3" }, "dependencies": { - "@itk-viewer/wasm-utils": "workspace:^", + "@itk-viewer/utils": "workspace:^", "itk-wasm": "1.0.0-b.160" }, "eslintConfig": { diff --git a/packages/element/examples/compare.html b/packages/element/examples/compare.html new file mode 100644 index 00000000..b8bff9f6 --- /dev/null +++ b/packages/element/examples/compare.html @@ -0,0 +1,31 @@ + + + + + + + Compare + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/packages/element/examples/compare.ts b/packages/element/examples/compare.ts new file mode 100644 index 00000000..3dcabb3c --- /dev/null +++ b/packages/element/examples/compare.ts @@ -0,0 +1,25 @@ +import { ZarrMultiscaleSpatialImage } from '@itk-viewer/io/ZarrMultiscaleSpatialImage.js'; +import { setPipelineWorkerUrl, setPipelinesBaseUrl } from 'itk-wasm'; + +const pipelineWorkerUrl = '/itk/web-workers/itk-wasm-pipeline.min.worker.js'; +setPipelineWorkerUrl(pipelineWorkerUrl); +const pipelineBaseUrl = '/itk/pipelines'; +setPipelinesBaseUrl(pipelineBaseUrl); + +document.addEventListener('DOMContentLoaded', async function () { + const [v0, v1] = Array.from(document.querySelectorAll('itk-viewport')).map( + (el) => el.getActor(), + ); + const camera = v0?.getSnapshot()?.context?.camera; + if (!camera) throw new Error('Could not get camera'); + v1?.send({ type: 'setCamera', camera }); + + const imagePath = '/ome-ngff-prototypes/single_image/v0.4/zyx.ome.zarr'; + const url = new URL(imagePath, document.location.origin); + const image = await ZarrMultiscaleSpatialImage.fromUrl(url); + + const viewerElement = document.querySelector('itk-viewer'); + if (!viewerElement) throw new Error('Could not find element'); + const viewer = viewerElement.getActor(); + viewer.send({ type: 'setImage', image, name: 'image' }); +}); diff --git a/packages/element/examples/view-2d.ts b/packages/element/examples/view-2d.ts index 98d78d85..4e523093 100644 --- a/packages/element/examples/view-2d.ts +++ b/packages/element/examples/view-2d.ts @@ -8,13 +8,11 @@ setPipelinesBaseUrl(pipelineBaseUrl); document.addEventListener('DOMContentLoaded', async function () { const imagePath = '/ome-ngff-prototypes/single_image/v0.4/zyx.ome.zarr'; - // const imagePath = '/astronaut.zarr'; const url = new URL(imagePath, document.location.origin); const image = await ZarrMultiscaleSpatialImage.fromUrl(url); const viewerElement = document.querySelector('itk-viewer'); if (!viewerElement) throw new Error('Could not find element'); const viewer = viewerElement.getActor(); - viewer.send({ type: 'setImage', image, name: 'image' }); }); diff --git a/packages/element/package.json b/packages/element/package.json index 42114567..57cad6a1 100644 --- a/packages/element/package.json +++ b/packages/element/package.json @@ -55,6 +55,7 @@ "@itk-viewer/remote-viewport": "workspace:^", "@itk-viewer/viewer": "workspace:^", "@itk-viewer/vtkjs": "workspace:^", + "@itk-viewer/utils": "workspace:^", "@lit/context": "^1.1.0", "gl-matrix": "^3.4.3", "itk-wasm": "1.0.0-b.160", diff --git a/packages/element/src/itk-image-info-viewport.cy.ts b/packages/element/src/itk-image-info-viewport.cy.ts index d664cbb9..657090b8 100644 --- a/packages/element/src/itk-image-info-viewport.cy.ts +++ b/packages/element/src/itk-image-info-viewport.cy.ts @@ -10,8 +10,6 @@ describe('ImageInfoViewport', () => { `); - - cy.get('itk-viewer').shadow().contains('Viewer'); }); it('has image info', () => { diff --git a/packages/element/src/itk-remote-viewport-webrtc.ts b/packages/element/src/itk-remote-viewport-webrtc.ts index 978f7197..a052c4d3 100644 --- a/packages/element/src/itk-remote-viewport-webrtc.ts +++ b/packages/element/src/itk-remote-viewport-webrtc.ts @@ -5,20 +5,19 @@ import { Ref, createRef, ref } from 'lit/directives/ref.js'; import { SelectorController } from 'xstate-lit'; import { ActorRefFrom } from 'xstate'; +import { Bounds } from '@itk-viewer/utils/bounding-box.js'; +import { chunk } from '@itk-viewer/io/dimensionUtils.js'; +import { viewportMachine } from '@itk-viewer/viewer/viewport.js'; +import { Camera } from '@itk-viewer/viewer/camera.js'; import { RemoteActor, createHyphaMachineConfig, createRemoteViewport, + Image, } from '@itk-viewer/remote-viewport/remote-viewport.js'; -import type { Image } from '@itk-viewer/remote-viewport/remote-viewport.js'; - import { ItkViewport } from './itk-viewport.js'; import './itk-camera.js'; -import { Bounds } from '@itk-viewer/io/types.js'; -import { chunk } from '@itk-viewer/io/dimensionUtils.js'; -import { viewportMachine } from '@itk-viewer/viewer/viewport.js'; -import { Camera } from '@itk-viewer/viewer/camera.js'; type ViewportActor = ActorRefFrom; diff --git a/packages/element/src/itk-remote-viewport.ts b/packages/element/src/itk-remote-viewport.ts index c268b575..1944edbc 100644 --- a/packages/element/src/itk-remote-viewport.ts +++ b/packages/element/src/itk-remote-viewport.ts @@ -5,20 +5,19 @@ import { Ref, createRef, ref } from 'lit/directives/ref.js'; import { SelectorController } from 'xstate-lit'; import { ActorRefFrom } from 'xstate'; +import { Bounds } from '@itk-viewer/utils/bounding-box.js'; +import { chunk } from '@itk-viewer/io/dimensionUtils.js'; +import { viewportMachine } from '@itk-viewer/viewer/viewport.js'; +import { Camera } from '@itk-viewer/viewer/camera.js'; import { RemoteActor, createHyphaMachineConfig, createRemoteViewport, + Image, } from '@itk-viewer/remote-viewport/remote-viewport.js'; -import type { Image } from '@itk-viewer/remote-viewport/remote-viewport.js'; - import { ItkViewport } from './itk-viewport.js'; import './itk-camera.js'; -import { Bounds } from '@itk-viewer/io/types.js'; -import { chunk } from '@itk-viewer/io/dimensionUtils.js'; -import { viewportMachine } from '@itk-viewer/viewer/viewport.js'; -import { Camera } from '@itk-viewer/viewer/camera.js'; type ViewportActor = ActorRefFrom; diff --git a/packages/element/src/itk-viewer-element.cy.ts b/packages/element/src/itk-viewer-element.cy.ts index b553abed..45fd4608 100644 --- a/packages/element/src/itk-viewer-element.cy.ts +++ b/packages/element/src/itk-viewer-element.cy.ts @@ -5,6 +5,5 @@ import './itk-viewer-element'; describe('Lit mount', () => { it('mounts', () => { cy.mount<'itk-viewer'>(html``); - cy.get('itk-viewer').shadow().contains('Viewer'); }); }); diff --git a/packages/element/src/itk-viewer-element.ts b/packages/element/src/itk-viewer-element.ts index 719de1ca..0e9450e2 100644 --- a/packages/element/src/itk-viewer-element.ts +++ b/packages/element/src/itk-viewer-element.ts @@ -18,10 +18,7 @@ export class ItkViewer extends LitElement { } render() { - return html` -

Viewer

- - `; + return html``; } } diff --git a/packages/io/package.json b/packages/io/package.json index 508df415..796413e2 100644 --- a/packages/io/package.json +++ b/packages/io/package.json @@ -45,7 +45,7 @@ }, "dependencies": { "@itk-viewer/blosc-zarr": "workspace:^", - "@itk-viewer/wasm-utils": "workspace:^", + "@itk-viewer/utils": "workspace:^", "axios": "^1.6.3", "gl-matrix": "^3.4.3", "itk-wasm": "1.0.0-b.160", diff --git a/packages/io/src/ImageDataFromChunks.worker.js b/packages/io/src/ImageDataFromChunks.worker.js index 1ab76362..0a3c5e09 100644 --- a/packages/io/src/ImageDataFromChunks.worker.js +++ b/packages/io/src/ImageDataFromChunks.worker.js @@ -7,7 +7,7 @@ import { ElementGetter, getSize, testLittleEndian, -} from '@itk-viewer/wasm-utils/dtypeUtils.js'; +} from '@itk-viewer/utils/dtypeUtils.js'; const haveSharedArrayBuffer = typeof self.SharedArrayBuffer === 'function'; diff --git a/packages/io/src/MultiscaleSpatialImage.ts b/packages/io/src/MultiscaleSpatialImage.ts index 3512c33d..15b6b075 100644 --- a/packages/io/src/MultiscaleSpatialImage.ts +++ b/packages/io/src/MultiscaleSpatialImage.ts @@ -10,8 +10,8 @@ import { import { ImageType, TypedArray } from 'itk-wasm'; import WebworkerPromise from 'webworker-promise'; -import { getDtype } from '@itk-viewer/wasm-utils/dtypeUtils.js'; - +import { getDtype } from '@itk-viewer/utils/dtypeUtils.js'; +import { Bounds, ReadonlyBounds } from '@itk-viewer/utils/bounding-box.js'; import { componentTypeToTypedArray } from './componentTypeToTypedArray.js'; import { chunk, @@ -23,9 +23,7 @@ import { } from './dimensionUtils.js'; import { transformBounds } from './transformBounds.js'; import { - Bounds, Extent, - ReadonlyBounds, ReadOnlyDimensionBounds, ScaleInfo, SpatialDimensions, diff --git a/packages/io/src/ZarrMultiscaleSpatialImage.ts b/packages/io/src/ZarrMultiscaleSpatialImage.ts index a8981926..1bca621c 100644 --- a/packages/io/src/ZarrMultiscaleSpatialImage.ts +++ b/packages/io/src/ZarrMultiscaleSpatialImage.ts @@ -2,7 +2,7 @@ import { ImageType, PixelTypes } from 'itk-wasm'; import PQueue from 'p-queue'; import { bloscZarrDecompress } from '@itk-viewer/blosc-zarr/bloscZarrDecompress.js'; -import { getComponentType } from '@itk-viewer/wasm-utils/dtypeUtils.js'; +import { getComponentType } from '@itk-viewer/utils/dtypeUtils.js'; import MultiscaleSpatialImage from './MultiscaleSpatialImage.js'; import { ZarrStoreParser } from './ZarrStoreParser.js'; diff --git a/packages/io/src/dimensionUtils.ts b/packages/io/src/dimensionUtils.ts index 5c9bcdeb..ea0ecd58 100644 --- a/packages/io/src/dimensionUtils.ts +++ b/packages/io/src/dimensionUtils.ts @@ -1,4 +1,4 @@ -import { Bounds, Dimension, SpatialDimensions } from './types.js'; +import { Dimension, SpatialDimensions } from './types.js'; export const CXYZT = Object.freeze(['c', 'x', 'y', 'z', 't'] as const); // viewer indexing @@ -43,14 +43,3 @@ export const nonNullable = (value: T): value is NonNullable => { }; export const XYZ = Object.freeze(['x', 'y', 'z']) as SpatialDimensions; - -const INIT_BOUNDS = Object.freeze([ - Number.MAX_VALUE, - -Number.MAX_VALUE, // X - Number.MAX_VALUE, - -Number.MAX_VALUE, // Y - Number.MAX_VALUE, - -Number.MAX_VALUE, // Z -] as Bounds); - -export const createBounds = () => [...INIT_BOUNDS] as Bounds; diff --git a/packages/io/src/transformBounds.ts b/packages/io/src/transformBounds.ts index 54c77acf..8a3eba46 100644 --- a/packages/io/src/transformBounds.ts +++ b/packages/io/src/transformBounds.ts @@ -1,5 +1,6 @@ import { ReadonlyMat4, vec3 } from 'gl-matrix'; -import type { Bounds, ReadonlyBounds, Vector3 } from './types.js'; +import { ReadonlyBounds, Bounds } from '@itk-viewer/utils/bounding-box.js'; +import type { Vector3 } from './types.js'; // from vtk.js/Sources/Common/DataModel/BoundingBox // Computes the two corners with minimal and maximal coordinates diff --git a/packages/io/src/types.ts b/packages/io/src/types.ts index 5f1e52a5..f511f81d 100644 --- a/packages/io/src/types.ts +++ b/packages/io/src/types.ts @@ -4,15 +4,6 @@ import { TypedArray } from 'itk-wasm'; export type ValueOf = T[keyof T]; export type Awaitable = Promise | T; -export type Bounds = [number, number, number, number, number, number]; -export type ReadonlyBounds = readonly [ - number, - number, - number, - number, - number, - number, -]; export type Extent = [number, number, number, number, number, number]; export type Range = [number, number]; export type ReadonlyRange = readonly [number, number]; diff --git a/packages/remote-viewport/package.json b/packages/remote-viewport/package.json index aaddaed6..9a9059a9 100644 --- a/packages/remote-viewport/package.json +++ b/packages/remote-viewport/package.json @@ -27,6 +27,7 @@ "dependencies": { "@itk-viewer/io": "workspace:^", "@itk-viewer/viewer": "workspace:^", + "@itk-viewer/utils": "workspace:^", "@itk-wasm/htj2k": "2.1.0", "gl-matrix": "^3.4.3", "imjoy-rpc": "^0.5.46", diff --git a/packages/remote-viewport/src/remote-machine.ts b/packages/remote-viewport/src/remote-machine.ts index 4e70851c..046a7221 100644 --- a/packages/remote-viewport/src/remote-machine.ts +++ b/packages/remote-viewport/src/remote-machine.ts @@ -17,12 +17,10 @@ import { getBytes, worldBoundsToIndexBounds, } from '@itk-viewer/io/MultiscaleSpatialImage.js'; -import { Bounds, ReadOnlyDimensionBounds } from '@itk-viewer/io/types.js'; -import { - XYZ, - createBounds, - ensuredDims, -} from '@itk-viewer/io/dimensionUtils.js'; +import { ReadOnlyDimensionBounds } from '@itk-viewer/io/types.js'; + +import { createBounds, Bounds } from '@itk-viewer/utils/bounding-box.js'; +import { XYZ, ensuredDims } from '@itk-viewer/io/dimensionUtils.js'; import { toMat4 } from '@itk-viewer/viewer/camera.js'; const MAX_IMAGE_BYTES_DEFAULT = 4000 * 1000 * 1000; // 4000 MB diff --git a/packages/remote-viewport/src/remote-viewport.ts b/packages/remote-viewport/src/remote-viewport.ts index 17f95c1d..b26196a6 100644 --- a/packages/remote-viewport/src/remote-viewport.ts +++ b/packages/remote-viewport/src/remote-viewport.ts @@ -2,16 +2,15 @@ import { createActor, fromPromise } from 'xstate'; import { hyphaWebsocketClient } from 'imjoy-rpc'; import { ReadonlyMat4, mat4, vec3 } from 'gl-matrix'; import { decode, Image } from '@itk-wasm/htj2k'; -import { RendererEntries, remoteMachine, Context } from './remote-machine.js'; +export type { Image } from '@itk-wasm/htj2k'; +import { Bounds } from '@itk-viewer/utils/bounding-box.js'; import { XYZ } from '@itk-viewer/io/dimensionUtils.js'; import { MultiscaleSpatialImage, worldBoundsToIndexBounds, } from '@itk-viewer/io/MultiscaleSpatialImage.js'; -import { Bounds } from '@itk-viewer/io/types.js'; import { transformBounds } from '@itk-viewer/io/transformBounds.js'; - -export type { Image } from '@itk-wasm/htj2k'; +import { RendererEntries, remoteMachine, Context } from './remote-machine.js'; // Should match constant in agave-renderer::renderer.py const RENDERER_SERVICE_ID = 'agave-renderer'; diff --git a/packages/wasm-utils/CHANGELOG.md b/packages/utils/CHANGELOG.md similarity index 100% rename from packages/wasm-utils/CHANGELOG.md rename to packages/utils/CHANGELOG.md diff --git a/packages/wasm-utils/package.json b/packages/utils/package.json similarity index 96% rename from packages/wasm-utils/package.json rename to packages/utils/package.json index 86860949..f73ee0a8 100644 --- a/packages/wasm-utils/package.json +++ b/packages/utils/package.json @@ -1,5 +1,5 @@ { - "name": "@itk-viewer/wasm-utils", + "name": "@itk-viewer/utils", "version": "0.1.2", "description": "Utils for io and itk-wasm packages", "type": "module", diff --git a/packages/utils/src/bounding-box.ts b/packages/utils/src/bounding-box.ts new file mode 100644 index 00000000..3bd1cadb --- /dev/null +++ b/packages/utils/src/bounding-box.ts @@ -0,0 +1,49 @@ +export type Bounds = [number, number, number, number, number, number]; + +export type ReadonlyBounds = readonly [ + number, + number, + number, + number, + number, + number, +]; + +const INIT_BOUNDS = Object.freeze([ + Number.MAX_VALUE, + -Number.MAX_VALUE, // X + Number.MAX_VALUE, + -Number.MAX_VALUE, // Y + Number.MAX_VALUE, + -Number.MAX_VALUE, // Z +] as ReadonlyBounds); + +export const createBounds = () => [...INIT_BOUNDS] as Bounds; + +export function addPoint(bounds: Bounds, x: number, y: number, z: number) { + const [xMin, xMax, yMin, yMax, zMin, zMax] = bounds; + bounds[0] = xMin < x ? xMin : x; + bounds[1] = xMax > x ? xMax : x; + bounds[2] = yMin < y ? yMin : y; + bounds[3] = yMax > y ? yMax : y; + bounds[4] = zMin < z ? zMin : z; + bounds[5] = zMax > z ? zMax : z; + return bounds; +} + +export function getCorners(bounds: ReadonlyBounds) { + const corners = new Array<[number, number, number]>(8); + let count = 0; + for (let ix = 0; ix < 2; ix++) { + for (let iy = 2; iy < 4; iy++) { + for (let iz = 4; iz < 6; iz++) { + corners[count++] = [bounds[ix], bounds[iy], bounds[iz]]; + } + } + } + return corners; +} + +export function getLength(bounds: ReadonlyBounds, index: number) { + return bounds[index * 2 + 1] - bounds[index * 2]; +} diff --git a/packages/wasm-utils/src/dtypeUtils.js b/packages/utils/src/dtypeUtils.js similarity index 100% rename from packages/wasm-utils/src/dtypeUtils.js rename to packages/utils/src/dtypeUtils.js diff --git a/packages/wasm-utils/tsconfig.build.json b/packages/utils/tsconfig.build.json similarity index 100% rename from packages/wasm-utils/tsconfig.build.json rename to packages/utils/tsconfig.build.json diff --git a/packages/viewer/package.json b/packages/viewer/package.json index c0f7d66c..dbff1f31 100644 --- a/packages/viewer/package.json +++ b/packages/viewer/package.json @@ -46,6 +46,7 @@ }, "dependencies": { "@itk-viewer/io": "workspace:^", + "@itk-viewer/utils": "workspace:^", "gl-matrix": "^3.4.3", "xstate": "5.5.2" } diff --git a/packages/viewer/src/camera.ts b/packages/viewer/src/camera.ts index d11e52c9..ec73dee9 100644 --- a/packages/viewer/src/camera.ts +++ b/packages/viewer/src/camera.ts @@ -1,4 +1,10 @@ -import { Bounds } from '@itk-viewer/io/types.js'; +import { + Bounds, + addPoint, + createBounds, + getCorners, + getLength, +} from '@itk-viewer/utils/bounding-box.js'; import { ReadonlyVec3, mat4, vec3, quat, ReadonlyQuat } from 'gl-matrix'; import { ActorRefFrom, AnyActorRef, assign, createActor, setup } from 'xstate'; @@ -29,8 +35,8 @@ const copyPose = (out: Pose, source: ReadonlyPose) => { }; export const toMat4 = (() => { - const scratch0 = new Float32Array(16); - const scratch1 = new Float32Array(16); + const scratch0 = new Float32Array(4); + const scratch1 = new Float32Array(3); const matTemp = mat4.create(); return (out: mat4, pose: ReadonlyPose) => { scratch1[0] = scratch1[1] = 0.0; @@ -47,6 +53,7 @@ export const toMat4 = (() => { type Context = { pose: Pose; + enableRotation: boolean; verticalFieldOfView: number; parallelScaleRatio: number; // distance to parallelScale poseWatchers: Array; @@ -63,6 +70,7 @@ export const cameraMachine = setup({ events: | { type: 'watchPose'; watcher: AnyActorRef } | { type: 'watchPoseStop'; watcher: AnyActorRef } + | { type: 'setEnableRotation'; enable: boolean } | SetPoseEvent; }, actions: { @@ -82,12 +90,13 @@ export const cameraMachine = setup({ }).createMachine({ id: 'camera', initial: 'active', - context: { + context: () => ({ pose: createPose(), + enableRotation: true, parallelScaleRatio: 1, verticalFieldOfView: 50, poseWatchers: [], - }, + }), states: { active: { on: { @@ -95,10 +104,17 @@ export const cameraMachine = setup({ actions: [ assign({ pose: ({ event: { pose }, context }) => { - return copyPose(context.pose, pose); + const clampedPose = { + ...pose, + rotation: context.enableRotation + ? pose.rotation + : context.pose.rotation, + }; + return copyPose(context.pose, clampedPose); }, parallelScaleRatio: ({ event: { pose }, context }) => { const { distance, parallelScale = undefined } = pose; + // parallelScale updated during reset, not during normal camera movement if (parallelScale === undefined) return context.parallelScaleRatio; return parallelScale / distance; @@ -140,6 +156,11 @@ export const cameraMachine = setup({ }), ], }, + setEnableRotation: { + actions: assign({ + enableRotation: ({ event }) => event.enable, + }), + }, }, }, }, @@ -174,8 +195,8 @@ export const reset3d = ( // compute the radius of the enclosing sphere radius = Math.sqrt(radius) * 0.5; - const angle = verticalFieldOfView * (Math.PI / 180); // to radians - const distance = radius / Math.sin(angle * 0.5); + const radians = verticalFieldOfView * (Math.PI / 180); + const distance = radius / Math.sin(radians * 0.5); return { center, rotation: pose.rotation, distance }; }; @@ -184,6 +205,7 @@ export const reset2d = ( pose: Pose, verticalFieldOfView: number, bounds: Bounds, + aspect: number, ) => { const center = vec3.fromValues( (bounds[0] + bounds[1]) / 2.0, @@ -191,20 +213,25 @@ export const reset2d = ( (bounds[4] + bounds[5]) / 2.0, ); - let w1 = bounds[1] - bounds[0]; - let w2 = bounds[3] - bounds[2]; - let w3 = bounds[5] - bounds[4]; - w1 *= w1; - w2 *= w2; - w3 *= w3; - let radius = w1 + w2 + w3; - // If we have just a single point, pick a radius of 1.0 - radius = radius === 0 ? 1.0 : radius; - // compute the radius of the enclosing sphere - radius = Math.sqrt(radius) * 0.5; + // Get the bounds in view coordinates + const visiblePoints = getCorners(bounds); + + const viewBounds = createBounds(); + const viewMat = mat4.create(); + toMat4(viewMat, pose); + for (let i = 0; i < visiblePoints.length; ++i) { + const point = visiblePoints[i]; + vec3.transformMat4(point, point, viewMat); + addPoint(viewBounds, ...point); + } + + const xLength = getLength(viewBounds, 0); + const yLength = getLength(viewBounds, 1); + // compute half the width or height of the viewport + const parallelScale = 0.5 * Math.max(yLength, xLength / aspect); - const angle = verticalFieldOfView * (Math.PI / 180); // to radians - const distance = radius / Math.sin(angle * 0.5); + const radians = verticalFieldOfView * (Math.PI / 180); + const distance = parallelScale / Math.tan(radians * 0.5); - return { center, rotation: pose.rotation, distance, parallelScale: radius }; + return { center, rotation: pose.rotation, distance, parallelScale }; }; diff --git a/packages/viewer/src/view-2d.ts b/packages/viewer/src/view-2d.ts index 991983f3..b2635b04 100644 --- a/packages/viewer/src/view-2d.ts +++ b/packages/viewer/src/view-2d.ts @@ -31,6 +31,7 @@ export const view2d = setup({ | { type: 'setSlice'; slice: number } | { type: 'setScale'; scale: number } | { type: 'setViewport'; viewport: ViewportActor } + | { type: 'setResolution'; resolution: [number, number] } | { type: 'setCamera'; camera: Camera } | CreateChild; }, @@ -61,17 +62,26 @@ export const view2d = setup({ actor.send(event); }); }, - resetCameraPose: async ({ context: { image, camera } }) => { + resetCameraPose: async ({ context: { image, camera, viewport } }) => { if (!image || !camera) return; + const aspect = (() => { + if (!viewport) return 1; + const { resolution: dims } = viewport.getSnapshot().context; + return dims[1] && dims[0] ? dims[0] / dims[1] : 1; + })(); const bounds = await image.getWorldBounds(image.coarsestScale); const { pose: currentPose, verticalFieldOfView } = camera.getSnapshot().context; - const pose = reset2d(currentPose, verticalFieldOfView, bounds); + const pose = reset2d(currentPose, verticalFieldOfView, bounds, aspect); camera.send({ type: 'setPose', pose, }); + camera.send({ + type: 'setEnableRotation', + enable: false, + }); }, }, }).createMachine({ @@ -90,9 +100,10 @@ export const view2d = setup({ spawn, context: { spawned, camera }, event: { logic, onActor }, + self, }) => { // @ts-expect-error cannot spawn actor of type that is not in setup() - const child = spawn(logic); + const child = spawn(logic, { input: { parent: self } }); if (camera) child.send({ type: 'setCamera', camera }); const id = Object.keys(spawned).length.toString(); onActor(child); @@ -138,6 +149,14 @@ export const view2d = setup({ }), ], }, + setResolution: { + actions: [ + ({ context: { viewport }, event: { resolution } }) => { + if (!viewport) return; + viewport.send({ type: 'setResolution', resolution }); + }, + ], + }, setCamera: { actions: [ assign({ diff --git a/packages/vtkjs/package.json b/packages/vtkjs/package.json index bf940993..4427e0e6 100644 --- a/packages/vtkjs/package.json +++ b/packages/vtkjs/package.json @@ -29,6 +29,7 @@ "@itk-viewer/io": "workspace:^", "@itk-viewer/viewer": "workspace:^", "@kitware/vtk.js": "^29.3.0", + "gl-matrix": "^3.4.3", "xstate": "5.5.2" } } diff --git a/packages/vtkjs/src/view-2d-vtkjs.cy.ts b/packages/vtkjs/src/view-2d-vtkjs.cy.ts index b3ebc2ff..2c5c697f 100644 --- a/packages/vtkjs/src/view-2d-vtkjs.cy.ts +++ b/packages/vtkjs/src/view-2d-vtkjs.cy.ts @@ -1,4 +1,4 @@ -import { createActor } from 'xstate'; +import { createActor, createMachine } from 'xstate'; import { setPipelineWorkerUrl, setPipelinesBaseUrl } from 'itk-wasm'; import { createLogic } from './view-2d-vtkjs.js'; import { ZarrMultiscaleSpatialImage } from '@itk-viewer/io/ZarrMultiscaleSpatialImage.js'; @@ -15,13 +15,24 @@ describe('View 2D vtk.js', () => { expect(createLogic()).to.be.ok; }); - it('takes imageBuild event', async () => { - const render = createActor(createLogic()).start(); - - const multiscale = await ZarrMultiscaleSpatialImage.fromUrl( - new URL('/astronaut.zarr', document.location.origin), - ); - const image = await multiscale.getImage(2); - render.send({ type: 'imageBuilt', image }); + it('takes imageBuilt event', () => { + const parent = createActor(createMachine({})).start(); + const render = createActor(createLogic(), { input: { parent } }).start(); + cy.mount('
'); + cy.get('#view-2d-vtkjs-container') + .then((button) => { + render.send({ type: 'setContainer', container: button[0] }); + }) + .then(() => { + return ZarrMultiscaleSpatialImage.fromUrl( + new URL('/astronaut.zarr', document.location.origin), + ); + }) + .then((multiscale) => { + return multiscale.getImage(2); + }) + .then((image) => { + render.send({ type: 'imageBuilt', image }); + }); }); }); diff --git a/packages/vtkjs/src/view-2d-vtkjs.machine.ts b/packages/vtkjs/src/view-2d-vtkjs.machine.ts index 268d38a6..d9896462 100644 --- a/packages/vtkjs/src/view-2d-vtkjs.machine.ts +++ b/packages/vtkjs/src/view-2d-vtkjs.machine.ts @@ -1,4 +1,4 @@ -import { assign, setup } from 'xstate'; +import { AnyActorRef, assign, sendTo, setup } from 'xstate'; import GenericRenderWindow, { vtkGenericRenderWindow, } from '@kitware/vtk.js/Rendering/Misc/GenericRenderWindow.js'; @@ -8,6 +8,7 @@ import { Camera, Pose } from '@itk-viewer/viewer/camera.js'; export type Context = { rendererContainer: vtkGenericRenderWindow; camera: Camera | undefined; + parent: AnyActorRef; }; export type SetContainerEvent = { @@ -17,9 +18,11 @@ export type SetContainerEvent = { export const view2dLogic = setup({ types: {} as { + input: { parent: AnyActorRef }; context: Context; events: | SetContainerEvent + | { type: 'setResolution'; resolution: [number, number] } | { type: 'imageBuilt'; image: BuiltImage } | { type: 'setSlice'; slice: number } | { type: 'setCameraPose'; pose: Pose; parallelScaleRatio: number } @@ -36,14 +39,21 @@ export const view2dLogic = setup({ applyCameraPose: (_, __: { pose: Pose; parallelScaleRatio: number }) => { throw new Error('Function not implemented.'); }, + forwardToParent: sendTo( + ({ context }) => context.parent, + ({ event }) => { + return event; + }, + ), }, }).createMachine({ - context: () => { + context: ({ input: { parent } }) => { return { rendererContainer: GenericRenderWindow.newInstance({ listenWindowResize: false, }), camera: undefined, + parent, }; }, id: 'view2dVtkjs', @@ -54,6 +64,9 @@ export const view2dLogic = setup({ setContainer: { actions: [{ type: 'setContainer' }], }, + setResolution: { + actions: ['forwardToParent'], + }, imageBuilt: { actions: [{ type: 'imageBuilt' }], }, diff --git a/packages/vtkjs/src/view-2d-vtkjs.ts b/packages/vtkjs/src/view-2d-vtkjs.ts index c9bcbe55..7667edd5 100644 --- a/packages/vtkjs/src/view-2d-vtkjs.ts +++ b/packages/vtkjs/src/view-2d-vtkjs.ts @@ -1,4 +1,4 @@ -import { AnyEventObject } from 'xstate'; +import { Actor, AnyEventObject } from 'xstate'; import { mat4 } from 'gl-matrix'; import '@kitware/vtk.js/Rendering/Profiles/Volume'; @@ -19,6 +19,7 @@ import { const setupContainer = ( rendererContainer: vtkGenericRenderWindow, container: HTMLElement, + self: Actor, ) => { rendererContainer.setContainer(container as HTMLElement); rendererContainer.resize(); @@ -26,6 +27,8 @@ const setupContainer = ( const resizer = new ResizeObserver((entries: Array) => { if (!entries.length) return; rendererContainer.resize(); + const { width, height } = entries[0].contentRect; + self.send({ type: 'setResolution', resolution: [width, height] }); }); resizer.observe(container); @@ -76,15 +79,21 @@ const createImplementation = () => { setContainer: ({ event, context: { rendererContainer }, + self, }: { event: AnyEventObject; context: Context; + self: unknown; // Actor }) => { const { container } = event as SetContainerEvent; if (!container) { return cleanupContainer(rendererContainer); } - const scene = setupContainer(rendererContainer, container); + const scene = setupContainer( + rendererContainer, + container, + self as Actor, + ); actor = scene.actor; mapper = scene.mapper; renderer = scene.renderer; @@ -107,10 +116,14 @@ const createImplementation = () => { addedActorToRenderer = true; renderer!.addActor(actor!); - const snap = context.camera!.getSnapshot(); - toMat4(viewMat, snap.context.pose); - const cameraVtk = renderer!.getActiveCamera(); - cameraVtk.setViewMatrix(viewMat as mat4); + const snap = context.camera?.getSnapshot(); + if (snap) { + toMat4(viewMat, snap.context.pose); + const cameraVtk = renderer!.getActiveCamera(); + cameraVtk.setViewMatrix(viewMat as mat4); + } else { + renderer!.resetCamera(); + } } render(); }, diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index aa3a50d3..8dbc84b6 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -65,9 +65,9 @@ importers: packages/blosc-zarr: dependencies: - '@itk-viewer/wasm-utils': + '@itk-viewer/utils': specifier: workspace:^ - version: link:../wasm-utils + version: link:../utils itk-wasm: specifier: 1.0.0-b.160 version: 1.0.0-b.160 @@ -87,6 +87,9 @@ importers: '@itk-viewer/remote-viewport': specifier: workspace:^ version: link:../remote-viewport + '@itk-viewer/utils': + specifier: workspace:^ + version: link:../utils '@itk-viewer/viewer': specifier: workspace:^ version: link:../viewer @@ -164,9 +167,9 @@ importers: '@itk-viewer/blosc-zarr': specifier: workspace:^ version: link:../blosc-zarr - '@itk-viewer/wasm-utils': + '@itk-viewer/utils': specifier: workspace:^ - version: link:../wasm-utils + version: link:../utils axios: specifier: ^1.6.3 version: 1.6.3 @@ -195,6 +198,9 @@ importers: '@itk-viewer/io': specifier: workspace:^ version: link:../io + '@itk-viewer/utils': + specifier: workspace:^ + version: link:../utils '@itk-viewer/viewer': specifier: workspace:^ version: link:../viewer @@ -222,7 +228,7 @@ importers: devDependencies: '@vitest/ui': specifier: ^1.0.4 - version: 1.2.2(vitest@1.2.2) + version: 1.0.4(vitest@1.0.4) happy-dom: specifier: ^12.10.3 version: 12.10.3 @@ -240,26 +246,39 @@ importers: version: 5.0.10 vitest: specifier: ^1.0.4 - version: 1.2.2(@vitest/ui@1.2.2)(happy-dom@12.10.3) + version: 1.0.4(@vitest/ui@1.0.4)(happy-dom@12.10.3) vitest-canvas-mock: specifier: ^0.3.3 - version: 0.3.3(vitest@1.2.2) + version: 0.3.3(vitest@1.0.4) packages/transfer-function-editor/examples/vtk-js: dependencies: '@kitware/vtk.js': specifier: ^29.2.0 - version: 29.3.1(@babel/preset-env@7.23.8)(autoprefixer@10.4.16)(webpack@5.89.0)(wslink@1.12.4) + version: 29.3.0(@babel/preset-env@7.23.9)(autoprefixer@10.4.17)(webpack@5.90.0)(wslink@1.12.4) devDependencies: vite: specifier: ^5.0.8 version: 5.0.10 + packages/utils: + dependencies: + itk-wasm: + specifier: 1.0.0-b.160 + version: 1.0.0-b.160 + devDependencies: + typescript: + specifier: ^5.3.3 + version: 5.3.3 + packages/viewer: dependencies: '@itk-viewer/io': specifier: workspace:^ version: link:../io + '@itk-viewer/utils': + specifier: workspace:^ + version: link:../utils gl-matrix: specifier: ^3.4.3 version: 3.4.3 @@ -284,7 +303,10 @@ importers: version: link:../viewer '@kitware/vtk.js': specifier: ^29.3.0 - version: 29.3.1(@babel/preset-env@7.23.8)(autoprefixer@10.4.16)(webpack@5.89.0)(wslink@1.12.4) + version: 29.3.1(@babel/preset-env@7.23.9)(autoprefixer@10.4.17)(webpack@5.90.0)(wslink@1.12.4) + gl-matrix: + specifier: ^3.4.3 + version: 3.4.3 xstate: specifier: 5.5.2 version: 5.5.2 @@ 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