mkdocs.yml

site_name: AutoPeptideML
site_description: Computational Pipeline for the Automatised Development of Peptide Bioactivity Prediction Models
watch: [autopeptideml]

nav:
- Home:
  - Overview: index.md
  - Code reference: autopeptideml/
- Code reference:
  - AutoPeptideML:
      - autopeptideml.md
  - RepresentationEngine:
      - representationengine.md
markdown_extensions:
  - attr_list
theme:
    name: material
    features:
      - content.code.annotate
      - navigation.tabs
      - navigation.top
    palette:
    - media: "(prefers-color-scheme: light)"
      scheme: default
      primary: black
      accent: purple
      # toggle:
      #   icon: material/weather-sunny
      #   name: Switch to light mode
    # - media: "(prefers-color-scheme: dark)"
    #   scheme: slate
    #   primary: black
    #   accent: lime
      # toggle:
      #   icon: material/weather-night
      #   name: Switch to dark mode
      features:
        - search.suggest
        - search.highlight
        - content.tabs.link
      icon:
        repo: fontawesome/brands/github-alt
      language: en
repo_name: IBM/AutoPeptideML
repo_url: https://github.com/IBM/AutoPeptideML
edit_uri: ''
plugins:
- search
- include-markdown
- mkdocstrings:
    handlers:
      python:
        import:
        - https://docs.python.org/3/objects.inv
        - https://installer.readthedocs.io/en/stable/objects.inv  # demonstration purpose in the docs
        - https://mkdocstrings.github.io/autorefs/objects.inv
        options:
          show_source: false
          docstring_style: sphinx
          docstring_options:
            ignore_init_summary: yes
          merge_init_into_class: yes
          show_submodules: yes
- markdownextradata:
    data: data
markdown_extensions:
- toc:
    permalink: true
- markdown.extensions.codehilite:
    guess_lang: false
- mdx_include:
    base_path: docs
- admonition
- codehilite
- extra
- pymdownx.superfences:
    custom_fences:
    - name: mermaid
      class: mermaid
      format: !!python/name:pymdownx.superfences.fence_code_format ''
- pymdownx.tabbed:
    alternate_style: true
- attr_list
- md_in_html
extra:
  social:
  - icon: fontawesome/brands/github-alt
    link: https://github.com/IBM/AutoPeptideML