From 85a677836e44c267b8fe5efe4235f3b32f59b239 Mon Sep 17 00:00:00 2001 From: Wout Bittremieux Date: Mon, 29 Jul 2024 11:34:43 +0200 Subject: [PATCH] Add meeting notes July 24 --- meeting_notes/2024/20240724_telco.md | 35 ++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 meeting_notes/2024/20240724_telco.md diff --git a/meeting_notes/2024/20240724_telco.md b/meeting_notes/2024/20240724_telco.md new file mode 100644 index 0000000..ab30d43 --- /dev/null +++ b/meeting_notes/2024/20240724_telco.md @@ -0,0 +1,35 @@ +# QC working group teleconference 24 July 2024 + +- Chris Bielow +- Wout Bittremieux +- Mathias Walzer + +--- + +## CV + +**Problem:** PSI-MS-CV was causing issues in OLS due to the use of STATO terms, causing PRIDE submissions to go down. +- Yasset [removed all STATO terms](https://github.com/HUPO-PSI/psi-ms-CV/pull/296) as a stopgap solution. +- Proposal: [Reintroduce STATO terms](https://github.com/HUPO-PSI/psi-ms-CV/pull/299) without importing the CV in the header. +- ✅ This is sufficient for our validator. + +**GitHub:** There are several old PRs related to CV porting, as well as the old CV still on GitHub. +- The PRs can be closed. Most relevant content has been moved to PSI-MS-CV, and it would take too much time to figure out what's what. + +## Validator + +- Mathias has updated the validator to address several issues that were recently identified. Additionally, the documentation has been extensively updated and it now includes several installation scripts for add-on functionality. +- Mathias will continue to work on updates and improvements, e.g. supported files for ID-based metrics. + +## Alternative mzQC use cases + +**Metabolomics** + +- Mathias presented the metabolomics batch correction use case, which is based on small molecule GC-MS data. + - This use case could also be integrated in the mzQC manuscript. +- We should ensure that our CV terms are inclusive for various fields such as metabolomics and lipidomics. + +**MS imaging** + +- Chris talked with some MSI people on campus: currently there's no standardized approach or tool support for QC yet. +- They will write a grant together to start developing such QC software.