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ipsportal.yaml
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ipsportal.yaml
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kind: Deployment
apiVersion: apps/v1
metadata:
namespace: ipsportal
name: db
labels:
app: ipsportal-db
spec:
selector:
matchLabels:
app: ipsportal-db
strategy:
rollingUpdate:
maxSurge: 0
type: RollingUpdate
template:
metadata:
labels:
app: ipsportal-db
spec:
containers:
- name: db
image: mongo:6
env:
- name: MONGO_INITDB_ROOT_USERNAME_FILE
value: /secrets/MONGO_USERNAME
- name: MONGO_INITDB_ROOT_PASSWORD_FILE
value: /secrets/MONGO_PASSWORD
securityContext:
capabilities:
add:
- CHOWN
- DAC_OVERRIDE
- FOWNER
- SETGID
- SETUID
drop:
- ALL
volumeMounts:
- mountPath: /data/db
name: mongo
- mountPath: /secrets
name: secrets
volumes:
- name: mongo
persistentVolumeClaim:
claimName: mongo
- name: secrets
secret:
secretName: mongo-secrets
defaultMode: 292
---
kind: Deployment
apiVersion: apps/v1
metadata:
namespace: ipsportal
name: minio
labels:
app: ipsportal-minio
spec:
selector:
matchLabels:
app: ipsportal-minio
strategy:
rollingUpdate:
maxSurge: 0
type: RollingUpdate
template:
metadata:
labels:
app: ipsportal-minio
spec:
containers:
- name: minio
image: "bitnami/minio:2024.6.4"
env:
- name: MINIO_SERVER_URL
value: "https://data.ipsportal.development.svc.spin.nersc.org/"
- name: MINIO_BROWSER_REDIRECT_URL
value: "https://data.ipsportal.development.svc.spin.nersc.org/console/"
envFrom:
- secretRef:
name: minio-secrets
securityContext:
capabilities:
add:
- CHOWN
- DAC_OVERRIDE
- FOWNER
- SETGID
- SETUID
drop:
- ALL
volumeMounts:
- mountPath: /bitnami/minio/data
name: minio
volumes:
- name: minio
persistentVolumeClaim:
claimName: minio
---
kind: Deployment
apiVersion: apps/v1
metadata:
namespace: ipsportal
name: jaeger
labels:
app: ipsportal-jaeger
spec:
selector:
matchLabels:
app: ipsportal-jaeger
template:
metadata:
labels:
app: ipsportal-jaeger
spec:
containers:
- name: jaeger
image: jaegertracing/all-in-one:1.38
env:
- name: COLLECTOR_ZIPKIN_HOST_PORT
value: "9411"
- name: QUERY_BASE_PATH
value: /jaeger
securityContext:
capabilities:
drop:
- ALL
livenessProbe:
httpGet:
path: /jaeger
port: 16686
scheme: HTTP
readinessProbe:
httpGet:
path: /jaeger
port: 16686
scheme: HTTP
---
kind: Deployment
apiVersion: apps/v1
metadata:
namespace: ipsportal
name: ipsportal
labels:
app: ipsportal-ipsportal
spec:
selector:
matchLabels:
app: ipsportal-ipsportal
template:
metadata:
labels:
app: ipsportal-ipsportal
spec:
containers:
- name: ipsportal
# use "latest" tag for production instance
image: ghcr.io/hpc-simtools/ips-portal/ipsportal:dev
imagePullPolicy: Always
envFrom:
- secretRef:
name: mongo-secrets
- secretRef:
name: minio-secrets
env:
- name: JAEGER_HOST
value: jaeger
- name: MONGO_HOST
value: db
- name: MINIO_PRIVATE_URL
value: https://data.ipsportal.development.svc.spin.nersc.org
- name: TZ
value: America/Los_Angeles
securityContext:
capabilities:
drop:
- ALL
livenessProbe:
httpGet:
path: /
port: 8080
scheme: HTTP
readinessProbe:
httpGet:
path: /
port: 8080
scheme: HTTP
---
kind: Deployment
apiVersion: apps/v1
metadata:
namespace: ipsportal
name: me
labels:
app: ipsportal-me
spec:
replicas: 0
selector:
matchLabels:
app: ipsportal-me
template:
metadata:
labels:
app: ipsportal-me
spec:
containers:
- name: me
image: mongo-express
env:
- name: ME_CONFIG_MONGODB_SERVER
value: db
- name: ME_CONFIG_SITE_BASEURL
value: /me
- name: ME_CONFIG_MONGODB_ADMINUSERNAME_FILE
value: /secrets/MONGO_USERNAME
- name: ME_CONFIG_MONGODB_ADMINPASSWORD_FILE
value: /secrets/MONGO_PASSWORD
- name: ME_CONFIG_BASICAUTH_USERNAME_FILE
value: /secrets/ME_USERNAME
- name: ME_CONFIG_BASICAUTH_PASSWORD_FILE
value: /secrets/ME_PASSWORD
securityContext:
capabilities:
drop:
- ALL
volumeMounts:
- mountPath: /secrets
name: secrets
volumes:
- name: secrets
secret:
secretName: mongo-secrets
---
kind: Deployment
apiVersion: apps/v1
metadata:
namespace: ipsportal
name: certbot-nginx
labels:
app: ipsportal-certbot-nginx
spec:
selector:
matchLabels:
app: ipsportal-certbot-nginx
template:
metadata:
labels:
app: ipsportal-certbot-nginx
spec:
containers:
- name: certbot-nginx
image: nginx
imagePullPolicy: Always
securityContext:
capabilities:
add:
- CHOWN
- DAC_OVERRIDE
- FOWNER
- SETGID
- SETUID
drop:
- ALL
volumeMounts:
- mountPath: /usr/share/nginx/html
name: certbot-html
volumes:
- name: certbot-html
persistentVolumeClaim:
claimName: certbot-html
---
kind: CronJob
apiVersion: batch/v1
metadata:
namespace: ipsportal
name: mongodb-dump
labels:
app: ipsportal-mongodb-dump
spec:
jobTemplate:
spec:
template:
spec:
containers:
- name: mongodb-dump
image: ghcr.io/hpc-simtools/ips-portal/mongodb-backup:latest
envFrom:
- secretRef:
name: mongo-secrets
env:
- name: MONGODB_DUMP_DIR
value: /backup
- name: MONGODB_DATABASE
value: portal
- name: MONGODB_HOST
value: db:27017
- name: MONGODB_DUMP_FILE_BASE
value: mongodb-dump.archive.gz
- name: MONGODB_DUMP_RETAIN_DAYS
value: "7"
securityContext:
capabilities:
add:
- NET_BIND_SERVICE
drop:
- ALL
runAsNonRoot: true
runAsUser: 59432
volumeMounts:
- mountPath: /backup
name: backup
restartPolicy: Never
securityContext:
fsGroup: 62365
volumes:
- hostPath:
path: /global/cfs/cdirs/atom/users/ipsportal
type: Directory
name: backup
schedule: 12 3 * * *
---
kind: CronJob
apiVersion: batch/v1
metadata:
namespace: ipsportal
name: certbot
labels:
app: ipsportal-certbot
spec:
jobTemplate:
spec:
template:
spec:
containers:
- name: certbot
command:
- /scripts/renew.sh
image: openchemistry/certbot-rancher
env:
- name: CERT_NAME
value: letsencrypt
- name: CONTEXT
value: c-fwj56:p-lbd2g
- name: EMAIL
value: whitfieldre@ornl.gov
- name: DOMAIN
value: lb.ipsportal.development.svc.spin.nersc.org
- name: ENDPOINT_URL
value: https://rancher2.spin.nersc.gov/v3
- name: NAMESPACE
value: ipsportal
securityContext:
capabilities:
drop:
- ALL
volumeMounts:
- mountPath: /secrets
name: secrets
- mountPath: /data/letsencrypt
name: certbot-html
- mountPath: /etc/letsencrypt
name: certbot-certs
restartPolicy: Never
volumes:
- name: secrets
secret:
secretName: mongo-secrets
- name: certbot-html
persistentVolumeClaim:
claimName: certbot-html
- name: certbot-certs
persistentVolumeClaim:
claimName: certbot-certs
schedule: 32 1 * * *
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
namespace: ipsportal
name: mongo
spec:
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 1Gi
storageClassName: nfs-client
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
namespace: ipsportal
name: minio
spec:
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 10Gi
storageClassName: nfs-client
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
namespace: ipsportal
name: certbot-html
spec:
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 1Gi
storageClassName: nfs-client
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
namespace: ipsportal
name: certbot-certs
spec:
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 1Gi
storageClassName: nfs-client
---
apiVersion: networking.k8s.io/v1
kind: Ingress
metadata:
namespace: ipsportal
name: lb
spec:
rules:
- host: lb.ipsportal.development.svc.spin.nersc.org
http:
paths:
- backend:
service:
name: ipsportal
port:
number: 8080
path: /
pathType: Prefix
- backend:
service:
name: jaeger
port:
number: 16686
path: /jaeger
pathType: Prefix
- backend:
service:
name: me
port:
number: 8081
path: /me
pathType: Prefix
- backend:
service:
name: certbot-nginx
port:
number: 80
path: /.well-known/acme-challenge
pathType: Prefix
tls:
- secretName: letsencrypt
---
apiVersion: v1
kind: Service
metadata:
namespace: ipsportal
name: db
annotations:
field.cattle.io/targetWorkloadIds: '["ipsportal/db"]'
spec:
ports:
- name: default
port: 27017
protocol: TCP
targetPort: 27017
selector:
app: ipsportal-db
---
apiVersion: v1
kind: Service
metadata:
namespace: ipsportal
name: minio
annotations:
field.cattle.io/targetWorkloadIds: '["ipsportal/minio"]'
spec:
ports:
- name: api
port: 9000
protocol: TCP
targetPort: 9000
- name: console
port: 9001
protocol: TCP
targetPort: 9001
selector:
app: ipsportal-minio
---
apiVersion: v1
kind: Service
metadata:
namespace: ipsportal
name: ipsportal
annotations:
field.cattle.io/targetWorkloadIds: '["ipsportal/ipsportal"]'
spec:
ports:
- name: default
port: 8080
protocol: TCP
targetPort: 8080
selector:
app: ipsportal-ipsportal
---
apiVersion: v1
kind: Service
metadata:
namespace: ipsportal
name: jaeger
annotations:
field.cattle.io/targetWorkloadIds: '["ipsportal/jaeger"]'
spec:
ports:
- name: default
port: 16686
protocol: TCP
targetPort: 16686
- name: zipkin
port: 9411
protocol: TCP
targetPort: 9411
selector:
app: ipsportal-jaeger
---
apiVersion: v1
kind: Service
metadata:
namespace: ipsportal
name: me
annotations:
field.cattle.io/targetWorkloadIds: '["ipsportal/me"]'
spec:
ports:
- name: default
port: 8081
protocol: TCP
targetPort: 8081
selector:
app: ipsportal-me
---
apiVersion: v1
kind: Service
metadata:
namespace: ipsportal
name: certbot-nginx
annotations:
field.cattle.io/targetWorkloadIds: '["ipsportal/certbot-nginx"]'
spec:
ports:
- name: default
port: 80
protocol: TCP
targetPort: 80
selector:
app: ipsportal-certbot-nginx
---
#################### begin data ingress config ##################
apiVersion: networking.k8s.io/v1
kind: Ingress
metadata:
namespace: ipsportal
name: data
spec:
rules:
- host: data.ipsportal.development.svc.spin.nersc.org
http:
paths:
- backend:
service:
name: minio
port:
number: 9000
path: /
pathType: Prefix
- backend:
service:
name: minio
port:
number: 9001
path: /console/
pathType: Prefix
- backend:
service:
name: certbot-nginx-data
port:
number: 80
path: /.well-known/acme-challenge
pathType: Prefix
tls:
- secretName: letsencrypt-data
---
kind: Deployment
apiVersion: apps/v1
metadata:
namespace: ipsportal
name: certbot-nginx-data
labels:
app: ipsportal-certbot-nginx-data
spec:
selector:
matchLabels:
app: ipsportal-certbot-nginx-data
template:
metadata:
labels:
app: ipsportal-certbot-nginx-data
spec:
containers:
- name: certbot-nginx-data
image: nginx
imagePullPolicy: Always
securityContext:
capabilities:
add:
- CHOWN
- DAC_OVERRIDE
- FOWNER
- SETGID
- SETUID
drop:
- ALL
volumeMounts:
- mountPath: /usr/share/nginx/html
name: certbot-html
volumes:
- name: certbot-html
persistentVolumeClaim:
claimName: certbot-html-data
---
kind: CronJob
apiVersion: batch/v1
metadata:
namespace: ipsportal
name: certbot-data
labels:
app: ipsportal-certbot-data
spec:
jobTemplate:
spec:
template:
spec:
containers:
- name: certbot-data
command:
- /scripts/renew.sh
image: openchemistry/certbot-rancher
env:
- name: CERT_NAME
value: letsencrypt-data
- name: CONTEXT
value: c-fwj56:p-lbd2g
- name: EMAIL
value: dranelt@ornl.gov
- name: DOMAIN
value: data.ipsportal.development.svc.spin.nersc.org
- name: ENDPOINT_URL
value: https://rancher2.spin.nersc.gov/v3
- name: NAMESPACE
value: ipsportal
securityContext:
capabilities:
drop:
- ALL
volumeMounts:
- mountPath: /secrets
name: secrets
- mountPath: /data/letsencrypt
name: certbot-html
- mountPath: /etc/letsencrypt
name: certbot-certs
restartPolicy: Never
volumes:
- name: secrets
secret:
secretName: mongo-secrets
- name: certbot-html
persistentVolumeClaim:
claimName: certbot-html-data
- name: certbot-certs
persistentVolumeClaim:
claimName: certbot-certs-data
schedule: 32 1 * * *
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
namespace: ipsportal
name: certbot-html-data
spec:
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 1Gi
storageClassName: nfs-client
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
namespace: ipsportal
name: certbot-certs-data
spec:
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 1Gi
storageClassName: nfs-client
---
apiVersion: v1
kind: Service
metadata:
namespace: ipsportal
name: certbot-nginx-data
annotations:
field.cattle.io/targetWorkloadIds: '["ipsportal/certbot-nginx-data"]'
spec:
ports:
- name: default
port: 80
protocol: TCP
targetPort: 80
selector:
app: ipsportal-certbot-nginx-data