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[BUG]ValueError: [E090] Extension 'similarity' already exists on Span. To overwrite the existing extension, set force=True on Span.set_extension. #94

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nitzanbar29 opened this issue Jan 3, 2024 · 3 comments

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@nitzanbar29
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Describe the bug
Hi, I use the example in the demo.

I'm facing this error:

ValueError: [E090] Extension 'similarity' already exists on Span. To overwrite the existing extension, set force=True on Span.set_extension.

To Reproduce

common English pipeline

nlp = spacy.load('en_core_web_sm')

@Language.component('quickumls_component')
def quickumls_component(doc):
return SpacyQuickUMLS(nlp, umls_path1)(doc)

quickumls_component = SpacyQuickUMLS(nlp, umls_path1)
nlp.add_pipe('quickumls_component', last=True)

doc = nlp('Pt c/o shortness of breath, chest pain, nausea, vomiting, diarrrhea')

for ent in doc.ents:
print('Entity text : {}'.format(ent.text))
print('Label (UMLS CUI) : {}'.format(ent.label_))
print('Similarity : {}'.format(ent..similarity))
print('Semtypes : {}'.format(ent.
.semtypes))

**Environment **

  • OS: Unbuntu
  • QuickUMLS version 1.4.0
  • UMLS version 2023

Thanks :)

@rmalla1
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rmalla1 commented Mar 31, 2024

I am facing the same issue.

@JuneHou
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JuneHou commented May 20, 2024

Got the same error code here.

@msegar
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msegar commented Aug 3, 2024

Same issue

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4 participants