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Add option to g_to_grch38 to return a list of MANE gene(s) #323

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korikuzma opened this issue Jul 23, 2024 · 0 comments · Fixed by #325
Closed

Add option to g_to_grch38 to return a list of MANE gene(s) #323

korikuzma opened this issue Jul 23, 2024 · 0 comments · Fixed by #325
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enhancement New feature or request priority:medium Medium priority

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Feature description

We should add the ability to return a list of MANE gene(s) given accession + start/end positions.

Use case

VarCat/Variation Normalizer needs the ability to get gene(s) from location coordinates. First pass will be getting MANE genes.

Proposed solution

Add get_mane_genes argument to g_to_grch38. The minimum information we need is NCBI ID, HGNC ID, and gene symbol.

Alternatives considered

See this gene-normalizer issue.

Implementation details

No response

Potential Impact

No response

Additional context

No response

Contribution

Yes, I can create a PR for this feature.

@korikuzma korikuzma added enhancement New feature or request priority:medium Medium priority labels Jul 23, 2024
@korikuzma korikuzma self-assigned this Jul 23, 2024
korikuzma added a commit that referenced this issue Jul 23, 2024
close #323

* `g_to_grch38` now returns `GenomicRepresentation` instead of dict
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Labels
enhancement New feature or request priority:medium Medium priority
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