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g_to_grch38
We should add the ability to return a list of MANE gene(s) given accession + start/end positions.
VarCat/Variation Normalizer needs the ability to get gene(s) from location coordinates. First pass will be getting MANE genes.
Add get_mane_genes argument to g_to_grch38. The minimum information we need is NCBI ID, HGNC ID, and gene symbol.
get_mane_genes
See this gene-normalizer issue.
No response
Yes, I can create a PR for this feature.
The text was updated successfully, but these errors were encountered:
feat!: add option to g_to_grch38 to return a list of MANE gene(s)
617c978
close #323 * `g_to_grch38` now returns `GenomicRepresentation` instead of dict
55993ca
korikuzma
Successfully merging a pull request may close this issue.
Feature description
We should add the ability to return a list of MANE gene(s) given accession + start/end positions.
Use case
VarCat/Variation Normalizer needs the ability to get gene(s) from location coordinates. First pass will be getting MANE genes.
Proposed solution
Add
get_mane_genes
argument tog_to_grch38
. The minimum information we need is NCBI ID, HGNC ID, and gene symbol.Alternatives considered
See this gene-normalizer issue.
Implementation details
No response
Potential Impact
No response
Additional context
No response
Contribution
Yes, I can create a PR for this feature.
The text was updated successfully, but these errors were encountered: