diff --git a/src/cool_seq_tool/mappers/exon_genomic_coords.py b/src/cool_seq_tool/mappers/exon_genomic_coords.py index 6b55746..89974ef 100644 --- a/src/cool_seq_tool/mappers/exon_genomic_coords.py +++ b/src/cool_seq_tool/mappers/exon_genomic_coords.py @@ -14,7 +14,7 @@ Strand, ) from cool_seq_tool.sources.mane_transcript_mappings import ManeTranscriptMappings -from cool_seq_tool.sources.uta_database import UtaDatabase +from cool_seq_tool.sources.uta_database import GenomicAlnData, UtaDatabase from cool_seq_tool.utils import service_meta _logger = logging.getLogger(__name__) @@ -653,7 +653,7 @@ async def _get_alt_ac_start_and_end( tx_exon_start: _ExonCoord | None = None, tx_exon_end: _ExonCoord | None = None, gene: str | None = None, - ) -> tuple[tuple[tuple[int, int], tuple[int, int]] | None, str | None]: + ) -> tuple[tuple[GenomicAlnData, GenomicAlnData] | None, str | None]: """Get aligned genomic coordinates for transcript exon start and end. :param tx_ac: Transcript accession