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artiax colormap command cannot be used #5

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liuzhehui opened this issue Dec 13, 2022 · 0 comments
Open

artiax colormap command cannot be used #5

liuzhehui opened this issue Dec 13, 2022 · 0 comments

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@liuzhehui
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Hi, thanks for the amazing work putting these visualisation plugins to work. Really splendid work!

I just have a little issue with the command 'artiax colormap' when I tried to color my particles based on the star file metadata imported from RELION. For example, if I want to color the particles using 'rlnMaxValueProbDistribution', I can do so with the interactive GUI you provided.
But when I typed the same command -

'artiax colormap #1.2.1.3 rlnMaxValueProbDistribution palette redgreen minValue 0.015419 maxValue 0.982082 transparency 0.0'

and tried it again in ChimeraX, it returned me with an error saying

'artiax colormap: Model #1.2.1.3 - "Markers" is not a particle list model.'

I am pretty sure the command is the same as what's been executed by the interactive GUI as reflected from the log information. Do you know anything about this issue? Please advise. Thanks!

P.S. the purpose for me trying to execute the command manually is to change the color palette to something else, because at the moment, there is only one option redgreen to chose from.

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