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Align dashboard with config from evaluation pipeline #27

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adamklie opened this issue Aug 21, 2024 · 0 comments
Open

Align dashboard with config from evaluation pipeline #27

adamklie opened this issue Aug 21, 2024 · 0 comments
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dashboard enhancement New feature or request

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@adamklie
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Have th pipeline dump a config.yaml in the output directory that I can use for the dashboard. Here is an example:

output_loc: /cellar/users/aklie/opt/gene_program_evaluation/dashapp/example_data/iPSC_EC_evaluations/cNMF_60_0.2_gene_names.h5mu
categorical_keys: ['sample']
continuous_keys: None
dim_reduce_keys: None
workdir: /cellar/users/aklie/opt/gene_program_evaluation/dashapp/example_data/iPSC_EC_evaluations
data_key: rna
annotations_loc: "annotations.csv"  # if none defaults to annotations.csv

User can manually add a location for annotations to be dumped as above. Otherwise it defaults to eval directory.

This is important for things like:

  1. Knowing what categorical keys to plot
  2. Knowing what the inference key (data_key) was
@adamklie adamklie added enhancement New feature or request dashboard labels Aug 21, 2024
@adamklie adamklie added this to the 2024 Gene Program Jamboree milestone Sep 10, 2024
@adamklie adamklie self-assigned this Sep 10, 2024
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