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Have th pipeline dump a config.yaml in the output directory that I can use for the dashboard. Here is an example:
config.yaml
output_loc: /cellar/users/aklie/opt/gene_program_evaluation/dashapp/example_data/iPSC_EC_evaluations/cNMF_60_0.2_gene_names.h5mu categorical_keys: ['sample'] continuous_keys: None dim_reduce_keys: None workdir: /cellar/users/aklie/opt/gene_program_evaluation/dashapp/example_data/iPSC_EC_evaluations data_key: rna annotations_loc: "annotations.csv" # if none defaults to annotations.csv
User can manually add a location for annotations to be dumped as above. Otherwise it defaults to eval directory.
This is important for things like:
The text was updated successfully, but these errors were encountered:
adamklie
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Have th pipeline dump a
config.yaml
in the output directory that I can use for the dashboard. Here is an example:User can manually add a location for annotations to be dumped as above. Otherwise it defaults to eval directory.
This is important for things like:
The text was updated successfully, but these errors were encountered: