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Trait enrichment results should be processed in evaluations #26

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adamklie opened this issue Aug 21, 2024 · 1 comment
Open

Trait enrichment results should be processed in evaluations #26

adamklie opened this issue Aug 21, 2024 · 1 comment
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enhancement New feature or request evaluations

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@adamklie
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To generate a PheWAS plot, we need to run https://github.com/EngreitzLab/gene_network_evaluation/blob/main/src/plotting/plot_gwas_enrichment.py#L10.

To avoid extra computation in the dashboard, we should just automatically compute this during evaluation and save it to a separate file trait_enrichment_processed.txt

@adamklie adamklie added enhancement New feature or request evaluations labels Aug 21, 2024
@adamklie
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This has now been implemented. I'm going to remove the trait_enrichment_processed.txt file and only output trait_enrichment.txt to avoid confusion.

@adamklie adamklie added this to the 2024 Gene Program Jamboree milestone Sep 10, 2024
@adamklie adamklie self-assigned this Sep 10, 2024
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