2_CITATION.md

ENCORE. Enhancing Computational Reproducibility

VERSION V4.1

CITATION

ENCORE is an initiative of the Bioinformatics Laboratory (www.bioinformaticslaboratory.eu) and can be cited as

• van Kampen, A., Mahamune, U., Jongejan, A., van Schaik, B., Balashova, D., Lashgari, D., Pras-Raves, M., Wever, E., Dane, A., Valiente, R.G., and Moerland, P (2024). ENCORE. A Practical Implementation to Improve Reproducibility and Transparency of Computational Research. MetaArXiv. February 19. doi:10.31222/osf.io/m9yqz. Supplementary materials: osf.io/j9hmw/

• van Kampen, A., Mahamune, U., Jongejan, A., van Schaik, B., Balashova, D., Lashgari, D., Pras-Raves, M., Wever, E., Dane, A., Valiente, R.G., and Moerland, P (2024). ENCORE. A Practical Implementation to Improve Reproducibility and Transparency of Computational Research. Manuscript In prep.

The FSS Navigator is part of ENCORE and can be referred to as:

• Van Kampen AHC, Mahamune U, Jongejan, A (2023) The standardized file system structure (FSS) navigator. Zenodo. DOI: https://doi.org/10.5281/zenodo.7985655

GitHub

GitHub repository containing the ENCORE sFSS template:

• https://github.com/EDS-Bioinformatics-Laboratory/ENCORE

ACKNOWLEDGEMENTS

ENCORE is an initiative of the Bioinformatics Laboratory (www.bioinformaticslaboratory.eu) with contributions from all group members:

• Prof. dr. Antoine van Kampen
• Dr. Perry Moerland
• Dr. Aldo Jongejan
• Dr. Adrie Dane
• Dr. Mia Pras-Raves (current address UMC Utrecht)
• Barbera van Schaik
• Eric Wever
• Dasha Balashova
• Rodrigo Garcia Valiente
• Danial Lashgari
• Utkarsh Mahamune