From 03ed014fce7c42f05eae346ac0ac8a4999d07c8c Mon Sep 17 00:00:00 2001
From: Anthony Galassi <28850131+bendhouseart@users.noreply.github.com>
Date: Thu, 7 Nov 2024 13:24:10 -0500
Subject: [PATCH 1/3] added note to switch to bash

---
 CONTRIBUTING.rst | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst
index c33c4615..118200e3 100644
--- a/CONTRIBUTING.rst
+++ b/CONTRIBUTING.rst
@@ -39,6 +39,10 @@ The preferred way to contribute to the BIDScoin code base or documentation is to
     pip uninstall bidscoin      # Hence we need to retrospectively remove BIDScoin from site-packages
     # NB: Install dcm2niix yourself (see the online installation instructions)
 
+    .. note::
+        Some users have reported issues with pip installing .[dev] or similar syntax on Mac, 
+        if you encounter this issues try switching shells from zsh to bash.
+
 3. When you wish to start a new contribution, create a new branch::
 
     git checkout -b [topic_of_your_contribution]

From ff729f70fc0a1369e600549bc252c1fefdb4797e Mon Sep 17 00:00:00 2001
From: Anthony Galassi <28850131+bendhouseart@users.noreply.github.com>
Date: Thu, 7 Nov 2024 13:25:19 -0500
Subject: [PATCH 2/3] reformat

---
 CONTRIBUTING.rst | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst
index 118200e3..fb8cc89c 100644
--- a/CONTRIBUTING.rst
+++ b/CONTRIBUTING.rst
@@ -39,9 +39,9 @@ The preferred way to contribute to the BIDScoin code base or documentation is to
     pip uninstall bidscoin      # Hence we need to retrospectively remove BIDScoin from site-packages
     # NB: Install dcm2niix yourself (see the online installation instructions)
 
-    .. note::
-        Some users have reported issues with pip installing .[dev] or similar syntax on Mac, 
-        if you encounter this issues try switching shells from zsh to bash.
+.. note::
+    Some users have reported issues with pip installing .[dev] or similar syntax on Mac, 
+    if you encounter this issues try switching shells from zsh to bash.
 
 3. When you wish to start a new contribution, create a new branch::
 

From 9a313d81103832bbc938376167e8dfd46ba34fa4 Mon Sep 17 00:00:00 2001
From: Anthony Galassi <28850131+bendhouseart@users.noreply.github.com>
Date: Thu, 7 Nov 2024 13:40:51 -0500
Subject: [PATCH 3/3] put note at bottom of section

---
 CONTRIBUTING.rst | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst
index fb8cc89c..feff9e8c 100644
--- a/CONTRIBUTING.rst
+++ b/CONTRIBUTING.rst
@@ -20,7 +20,7 @@ Project organization
 How to contribute code
 ----------------------
 
-The preferred way to contribute to the BIDScoin code base or documentation is to use a `forking wokflow <https://www.atlassian.com/git/tutorials/comparing-workflows/forking-workflow>`__, i.e. fork the `main repository <https://github.com/Donders-Institute/bidscoin>`__, create a feature branch, and submit a pull request. If you are unsure what that means, here is a set-up workflow you may wish to follow:
+The preferred way to contribute to the BIDScoin code base or documentation is to use a `forking workflow <https://www.atlassian.com/git/tutorials/comparing-workflows/forking-workflow>`__, i.e. fork the `main repository <https://github.com/Donders-Institute/bidscoin>`__, create a feature branch, and submit a pull request. If you are unsure what that means, here is a set-up workflow you may wish to follow:
 
 0. Fork the `project repository <https://github.com/Donders-Institute/bidscoin>`_ on GitHub, by clicking on the “Fork” button near the top of the page — this will create a personal copy of the repository.
 
@@ -39,10 +39,6 @@ The preferred way to contribute to the BIDScoin code base or documentation is to
     pip uninstall bidscoin      # Hence we need to retrospectively remove BIDScoin from site-packages
     # NB: Install dcm2niix yourself (see the online installation instructions)
 
-.. note::
-    Some users have reported issues with pip installing .[dev] or similar syntax on Mac, 
-    if you encounter this issues try switching shells from zsh to bash.
-
 3. When you wish to start a new contribution, create a new branch::
 
     git checkout -b [topic_of_your_contribution]
@@ -55,6 +51,8 @@ The preferred way to contribute to the BIDScoin code base or documentation is to
 
 Git will provide you with a link which you can click to initiate a pull request (if any of the above seems overwhelming, you can look up the `Git <http://git-scm.com/documentation>`__ or `GitHub <https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request>`__ documentation on the web)
 
+.. Some Mac users on have encountered issues when running pip install bidscoin[dev] or pip install .[all] during setup. If you encounter this try switching from zsh to bash.
+
 Coding guidelines
 -----------------