From e83139589211ec0789f5498ae889fc20f7911ec6 Mon Sep 17 00:00:00 2001 From: Dan King Date: Wed, 20 Mar 2024 11:51:37 -0400 Subject: [PATCH] Update terra-jupyter-aou to Hail 0.2.128 (#476) * Update terra-jupyter-aou to Hail version 0.2.127 * Update Dockerfile * Update CHANGELOG.md * Update CHANGELOG.md * update plink2 path --------- Co-authored-by: hail Co-authored-by: LizBaldo Co-authored-by: LizBaldo --- config/conf.json | 2 +- terra-jupyter-aou/CHANGELOG.md | 6 ++++++ terra-jupyter-aou/Dockerfile | 4 ++-- 3 files changed, 9 insertions(+), 3 deletions(-) diff --git a/config/conf.json b/config/conf.json index ab3574b0..40095a2a 100644 --- a/config/conf.json +++ b/config/conf.json @@ -135,7 +135,7 @@ "r" ], "packages" : {}, - "version" : "2.2.8", + "version" : "2.2.9", "automated_flags" : { "include_in_ui" : false, "generate_docs" : false, diff --git a/terra-jupyter-aou/CHANGELOG.md b/terra-jupyter-aou/CHANGELOG.md index 9b34047c..cb8b9a82 100644 --- a/terra-jupyter-aou/CHANGELOG.md +++ b/terra-jupyter-aou/CHANGELOG.md @@ -1,3 +1,9 @@ +## 2.2.9 - 2024-01-12 +- Update `hail` to `0.2.128` + - See https://hail.is/docs/0.2/change_log.html#version-0-2-128) for details + +Image URL: `us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.9` + ## 2.2.8 - 2023-11-14T15:56:44.507726350Z - Update `terra-jupyter-gatk` to `2.3.6` diff --git a/terra-jupyter-aou/Dockerfile b/terra-jupyter-aou/Dockerfile index 51b28bc0..ae372c82 100644 --- a/terra-jupyter-aou/Dockerfile +++ b/terra-jupyter-aou/Dockerfile @@ -47,7 +47,7 @@ ENV PYTHONPATH $PYTHONPATH:/usr/lib/spark/python ENV PYSPARK_PYTHON=python3 -ENV HAIL_VERSION=0.2.126 +ENV HAIL_VERSION=0.2.128 RUN find $JUPYTER_HOME/scripts -name '*.sh' -type f | xargs chmod +x \ && $JUPYTER_HOME/scripts/kernel/kernelspec.sh $JUPYTER_HOME/scripts/kernel /opt/conda/share/jupyter/kernels \ @@ -95,7 +95,7 @@ RUN mkdir -p /tmp/plink && \ RUN mkdir -p /tmp/plink2 && \ cd /tmp/plink2 && \ - curl -fsSL -o plink2.zip "https://s3.amazonaws.com/plink2-assets/alpha2/plink2_linux_x86_64.zip" && \ + curl -fsSL -o plink2.zip "https://s3.amazonaws.com/plink2-assets/plink2_linux_x86_64_latest.zip" && \ unzip plink2.zip && \ mv plink2 /bin/plink2 && \ cd $HOME && \