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CMakeLists.txt
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CMakeLists.txt
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#####################################################################
# Shark Machine Learning Library
# Top-Level CMake driver file
# Optionally included sub-probjects:
# * Test/CMakeLists.txt
# * examples/CMakeLists.txt
# * doc/CMakeLists.txt
#####################################################################
project( shark )
cmake_minimum_required( VERSION 3.1 FATAL_ERROR)
set_property(GLOBAL PROPERTY USE_FOLDERS ON)
INCLUDE (CheckFunctionExists)
cmake_policy(SET CMP0003 NEW)
if(POLICY CMP0042)
cmake_policy(SET CMP0042 NEW)
endif()
if(POLICY CMP0053)
cmake_policy(SET CMP0053 NEW)
endif()
#=========================================================
# Output directories.
if(NOT CMAKE_RUNTIME_OUTPUT_DIRECTORY)
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${shark_BINARY_DIR}/bin")
endif()
if(NOT CMAKE_LIBRARY_OUTPUT_DIRECTORY)
if(UNIX)
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${shark_BINARY_DIR}/lib")
else()
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${shark_BINARY_DIR}/bin")
endif()
endif()
if(NOT CMAKE_ARCHIVE_OUTPUT_DIRECTORY)
set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${shark_BINARY_DIR}/lib")
endif()
mark_as_advanced(
CMAKE_RUNTIME_OUTPUT_DIRECTORY
CMAKE_LIBRARY_OUTPUT_DIRECTORY
CMAKE_ARCHIVE_OUTPUT_DIRECTORY
)
#####################################################################
# Static/Shared libraries
#####################################################################
option(BUILD_SHARED_LIBS "Compile shark into a dynamic library instead of a static one." OFF)
if(BUILD_SHARED_LIBS)
set(SHARK_USE_DYNLIB 1)
endif()
#####################################################################
# Version information
#####################################################################
option(BUILD_OFFICIAL_RELEASE "Is this an official Shark release." OFF )
mark_as_advanced( BUILD_OFFICIAL_RELEASE )
set(SHARK_VERSION_MAJOR 3)
set(SHARK_VERSION_MINOR 1)
set(SHARK_VERSION_PATCH 0)
set(SHARK_VERSION ${SHARK_VERSION_MAJOR}.${SHARK_VERSION_MINOR}.${SHARK_VERSION_PATCH})
set(SHARK_SOVERSION 0)
#####################################################################
# Adjustments for cpack and deb package generation
#####################################################################
set(CPACK_GENERATOR TGZ DEB)
set(CPACK_PACKAGE_NAME "libshark")
set(CPACK_BUNDLE_NAME "libshark")
set(CPACK_PACKAGE_VENDOR "Institut fur Neuroinformatik, Ruhr-Universitaet Bochum")
set(CPACK_PACKAGE_VERSION_MAJOR ${SHARK_VERSION_MAJOR})
set(CPACK_PACKAGE_VERSION_MINOR ${SHARK_VERSION_MINOR})
set(CPACK_PACKAGE_VERSION_PATCH ${SHARK_VERSION_PATCH})
set(CPACK_PACKAGE_VERSION ${SHARK_VERSION_MAJOR}.${SHARK_VERSION_MINOR}.${SHARK_VERSION_PATCH})
set(CPACK_RESOURCE_FILE_LICENSE ${CMAKE_CURRENT_SOURCE_DIR}/COPYING.LESSER)
#Debian Compatible naming by default
if(CMAKE_SIZEOF_VOID_P MATCHES "8")
set(CPACK_DEBIAN_PACKAGE_ARCHITECTURE amd64)
else()
set(CPACK_DEBIAN_PACKAGE_ARCHITECTURE i386)
endif()
set(CPACK_PACKAGE_FILE_NAME ${CPACK_PACKAGE_NAME}_${CPACK_PACKAGE_VERSION}_${CPACK_DEBIAN_PACKAGE_ARCHITECTURE})
set(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-all-dev (>=1.54)")
set(CPACK_DEBIAN_PACKAGE_DESCRIPTION
"SHARK is a modular C++ library for the design and optimization of adaptive systems. It provides methods for linear and nonlinear optimization, in particular evolutionary and gradient-based algorithms, kernel-based learning algorithms and neural networks, and various other machine learning techniques. SHARK serves as a toolbox to support real world applications as well as research indifferent domains of computational intelligence and machine learning. The sources are compatible with the following platforms: Windows, Solaris, MacOS X, and Linux."
)
set( CPACK_DEBIAN_PACKAGE_MAINTAINER "Christian Igel <c.igel@ieee.org>" )
#####################################################################
# Adjust include, lib, example and doc paths for installation
#####################################################################
if( UNIX )
include(GNUInstallDirs)
set( SHARK_INSTALL_BIN_DIR ${CMAKE_INSTALL_BINDIR} CACHE STRING "" )
set( SHARK_INSTALL_INCLUDE_DIR ${CMAKE_INSTALL_INCLUDEDIR} CACHE STRING "" )
set( SHARK_INSTALL_LIB_DIR ${CMAKE_INSTALL_LIBDIR} CACHE STRING "" )
set( SHARK_INSTALL_CONTRIB_DIR ${CMAKE_INSTALL_DATADIR}/shark/contrib CACHE STRING "" )
set( SHARK_INSTALL_EXAMPLE_DIR ${CMAKE_INSTALL_DATADIR}/shark/examples CACHE STRING "" )
set( SHARK_INSTALL_DOC_DIR ${CMAKE_INSTALL_DATADIR}/shark/doc CACHE STRING "" )
else()
set( SHARK_INSTALL_BIN_DIR bin )
set( SHARK_INSTALL_INCLUDE_DIR include/shark/ )
set( SHARK_INSTALL_LIB_DIR lib/ )
set( SHARK_INSTALL_CONTRIB_DIR contrib/ )
set( SHARK_INSTALL_EXAMPLE_DIR examples/ )
set( SHARK_INSTALL_DOC_DIR doc )
endif()
#####################################################################
# Enable installer and package generation
#####################################################################
include( CPack )
#####################################################################
# Explicit macro setup for debug configuration
#####################################################################
# enable or disable debugging, default is Release
if(NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE "Release")
endif()
if (UNIX)
add_compile_options("$<$<CONFIG:DEBUG>:-Wall>")
endif()
list(APPEND COMPILE_DEFINITIONS_RELEASE NDEBUG)
message(STATUS "Will build: " ${CMAKE_BUILD_TYPE})
#####################################################################
# Boost configuration
#####################################################################
set(Boost_USE_STATIC_LIBS OFF CACHE BOOL "use static libraries from Boost")
set(Boost_USE_MULTITHREADED ON)
add_definitions(-DBOOST_PARAMETER_MAX_ARITY=15)
add_definitions(-DBOOST_FILESYSTEM_VERSION=3)
add_definitions(-DBOOST_RESULT_OF_USE_DECLTYPE)
# Should we link the boost test dynamically
if(NOT Boost_USE_STATIC_LIBS)
add_definitions(-DBOOST_TEST_DYN_LINK)
add_definitions(-DBOOST_ALL_DYN_LINK)
endif()
find_package(
Boost 1.48.0 REQUIRED COMPONENTS
serialization
filesystem system
)
if(NOT Boost_FOUND)
message(FATAL_ERROR "Please make sure Boost 1.48.0 is installed on your system")
endif()
if (WIN32)
# disable autolinking in boost
add_definitions( -DBOOST_ALL_NO_LIB )
endif()
include_directories(SYSTEM ${Boost_INCLUDE_DIR} )
link_directories( ${Boost_LIBRARY_DIR} )
# Set the libraries needed by Shark
list(APPEND LINK_LIBRARIES ${Boost_LIBRARIES})
message( STATUS "Using boost from " ${Boost_LIBRARY_DIR} )
#####################################################################
# OpenMP
#####################################################################
option( ENABLE_OPENMP "Enable OpenMP" ON )
if( ENABLE_OPENMP )
find_package( OpenMP QUIET )
if( OPENMP_FOUND )
message( STATUS "OpenMP found" )
set(SHARK_USE_OPENMP 1)
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
set(SHARK_REQUIRED_C_FLAGS "${OpenMP_C_FLAGS}")
set(SHARK_REQUIRED_CXX_FLAGS "${OpenMP_CXX_FLAGS}")
set(SHARK_REQUIRED_EXE_LINKER_FLAGS "${OpenMP_EXE_LINKER_FLAGS}")
else()
message( STATUS "OpenMP not found" )
endif()
else()
message( STATUS "Building without OpenMP as requested." )
endif()
#####################################################################
# HDF5 configuration
#####################################################################
find_package(HDF5 COMPONENTS C CXX HL QUIET)
mark_as_advanced(HDF5_DIR)
if(HDF5_FOUND)
if(HDF5_C_COMPILER_EXECUTABLE AND HDF5_CXX_COMPILER_EXECUTABLE)
message(STATUS "Checking HDF5 installation: HDF5 installation seems ok.")
include_directories( ${HDF5_INCLUDE_DIRS} )
list(APPEND LINK_LIBRARIES ${HDF5_LIBRARIES} ${HDF5_HL_LIBRARIES})
else()
message(STATUS "Checking HDF5 installation:HDF5 package might be broken.")
if(NOT( HDF5_C_COMPILER_EXECUTABLE))
message(STATUS " C Compiler Extension not found.")
endif()
if(NOT( HDF5_CXX_COMPILER_EXECUTABLE))
message(STATUS " CXX Compiler Extension not found.")
endif()
message(STATUS "Disabling HDF5.")
unset( HDF5_FOUND )
endif()
else()
message(STATUS "HDF5 not found, skip")
endif()
#####################################################################
# BLAS configuration
#####################################################################
option( ENABLE_SIMD "Use experimental SIMD feature in linear algebra" OFF )
if( ENABLE_SIMD )
set( SHARK_USE_SIMD 1)
endif()
option( ENABLE_CBLAS "Use Installed Linear Algebra Library" ON )
if( ENABLE_CBLAS )
set(CBLAS_VENDOR FALSE)
if( APPLE )
set(CBLAS_VENDOR "Accelerate")
set(CBLAS_INCLUDES "")
set(CBLAS_LIBRARIES "-framework Accelerate" )
else()
#todo: do a propper vendor check
find_library(OPENBLAS_LIBRARY openblas
HINTS ${CBLAS_ROOT}/lib /opt/local/lib /usr/lib/openblas-base
)
find_library(CBLAS_LIBRARY cblas
HINTS ${ATLAS_ROOT}/lib ${CBLAS_ROOT}/lib /opt/local/lib /usr/lib64/atlas/ /usr/lib/libblas
)
find_library(CLAPACK_LIBRARY lapack
HINTS ${ATLAS_ROOT}/lib ${CBLAS_ROOT}/lib /opt/local/lib /usr/lib64/atlas/ /usr/lib/lapack
)
find_library(ATLAS_LIBRARY atlas
HINTS ${ATLAS_ROOT}/lib ${CBLAS_ROOT}/lib /opt/local/lib /usr/lib64/atlas/ /usr/lib/atlas-base
)
mark_as_advanced(
OPENBLAS_LIBRARY
CBLAS_LIBRARY
CLAPACK_LIBRARY
ATLAS_LIBRARY
)
#find the cblas.h include path
if(CBLAS_LIBRARY )
get_filename_component(CBLAS_LIB_PATH ${CBLAS_LIBRARY} PATH )
elseif( OPENBLAS_LIBRARY)
get_filename_component(CBLAS_LIB_PATH ${OPENBLAS_LIBRARY} PATH )
endif()
if(CBLAS_LIB_PATH)
find_file(CBLAS_INCLUDES cblas.h
PATHS ${CBLAS_LIB_PATH} ${CBLAS_LIB_PATH}/../include
)
get_filename_component(CBLAS_INCLUDES ${CBLAS_INCLUDES} PATH )
endif()
if(ATLAS_LIBRARY)
get_filename_component(ATLAS_LIBRARY_PATH ${ATLAS_LIBRARY} PATH )
find_file(CLAPACK_INCLUDES clapack.h
PATHS
${ATLAS_LIBRARY_PATH}
${ATLAS_LIBRARY_PATH}/../include
${ATLAS_LIBRARY_PATH}/../include/atlas
${ATLAS_LIBRARY_PATH}/../../include/atlas
)
get_filename_component(CLAPACK_INCLUDES ${CLAPACK_INCLUDES} PATH )
set(CBLAS_INCLUDES ${CBLAS_INCLUDES} ${CLAPACK_INCLUDES})
endif()
if( OPENBLAS_LIBRARY AND CBLAS_INCLUDES)
set(CBLAS_VENDOR "OpenBLAS")
set(CBLAS_LIBRARIES ${OPENBLAS_LIBRARY})
elseif( CBLAS_LIBRARY AND CLAPACK_LIBRARY AND ATLAS_LIBRARY AND CBLAS_INCLUDES)
set(CBLAS_VENDOR "ATLAS")
set(CBLAS_LIBRARIES ${CLAPACK_LIBRARY} ${CBLAS_LIBRARY} ${ATLAS_LIBRARY})
elseif( CBLAS_LIBRARY AND CBLAS_INCLUDES)
#check that we can compile a basic program with the libraries we have found
#vendor versions might come with additional libraries which would be bad.
try_compile(CBLAS_COMPILE
"${PROJECT_BINARY_DIR}/cBlasCheck"
"${CMAKE_SOURCE_DIR}/cBlasCheck.cpp"
CMAKE_FLAGS "-DINCLUDE_DIRECTORIES=${CBLAS_INCLUDES}"
LINK_LIBRARIES ${CBLAS_LIBRARY}
)
if(CBLAS_COMPILE)
set(CBLAS_VENDOR "GENERIC")
set(CBLAS_LIBRARIES ${CBLAS_LIBRARY})
else()
message(WARNING "Unknown CBLAS. Can not use it")
endif()
endif()
endif()
if(CBLAS_VENDOR)
message(STATUS "CBLAS FOUND: " ${CBLAS_VENDOR} " with include directory " ${CBLAS_INCLUDES} )
set(SHARK_USE_CBLAS 1)
list(APPEND EXTRA_INCLUDE_DIRECTORIES ${CBLAS_INCLUDES} )
list(APPEND LINK_LIBRARIES ${CBLAS_LIBRARIES})
include_directories ( ${CBLAS_INCLUDES} )
else()
message(STATUS "No usable CBLAS Library found. No fast linear Algebra used.")
endif()
#Special setup for ATLAS
if( CBLAS_VENDOR MATCHES "ATLAS" )
set( SHARK_USE_ATLAS_LAPACK 1) # ATLAS always contains some LAPACK methods that we can use
#check for full lapack
set(CMAKE_REQUIRE_QUIET 1)
set(CMAKE_REQUIRED_LIBRARIES ${CBLAS_LIBRARIES})
check_function_exists(dsyev_ ATLAS_FULL_LAPACK)
if( ATLAS_FULL_LAPACK )
set( SHARK_USE_LAPACK 1)
message(STATUS "Detected ATLAS with full LAPACK package. Using it!")
endif()
endif()
endif()
#####################################################################
# clBLAS configuration
#####################################################################
option( ENABLE_CLBLAS "Use GPU backend (currently only as BLAS backend for testing. unused by shark" OFF )
if( ENABLE_CLBLAS )
if(${Boost_MINOR_VERSION} LESS 61)
message(FATAL_ERROR "Boost below 1.61 does not include Boost.Compute.")
endif()
find_package( clBLAS REQUIRED)
if(NOT clBLAS_FOUND)
message(FATAL_ERROR "clBLAS could not be found.")
endif()
include_directories(SYSTEM ${Boost_INCLUDE_DIR} ${CLBLAS_INCLUDE_DIRS} ${CLBLAS_INCLUDE_DIRS}/clBLAS/ )
# Set the libraries needed by Shark
list(APPEND LINK_LIBRARIES ${Boost_LIBRARIES} ${CLBLAS_LIBRARIES})
set(SHARK_USE_CLBLAS 1)
endif()
#####################################################################
# Static Code Analysis
#####################################################################
option(USE_CPPCHECK "Use CPPCheck Static Code Analysis" OFF)
mark_as_advanced(USE_CPPCHECK)
if(USE_CPPCHECK)
find_program(CPP_CHECK cppcheck)
mark_as_advanced(CPP_CHECK)
if(CPP_CHECK)
message(STATUS "cppcheck available for static code analysis." )
add_custom_target(code_analysis
${CPP_CHECK} --enable=all --xml --force -I${CMAKE_CURRENT_SOURCE_DIR}/include ${CMAKE_CURRENT_SOURCE_DIR} 2> StaticAnalysis.xml)
endif()
endif()
#####################################################################
# GCov Code Analysis
#####################################################################
option(USE_GCOV_CHECK "GCov Coverage Check" OFF)
if(USE_GCOV_CHECK)
find_program(GCOV_CHECK gcov)
if(CMAKE_BUILD_TYPE MATCHES "Release")
message( FATAL_ERROR
"\nYou specified a Release Build."
"This does not make sense, if Coverage is enabled."
"Please change Build type to Debug or turn off Coverage."
)
endif()
message(STATUS "GCov available for static code analysis. Configuring for Code Check." )
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} --coverage")
set(CFLAGS "${CFLAGS} -g -O0 -Wall -W --coverage")
set(LDFLAGS "${LDFLAGS} --coverage")
endif()
#####################################################################
# Adjust compiler flags and settings for MSVC
#####################################################################
if( MSVC )
#4250: inherit via dominance
add_definitions(/wd4250)
#4251: needs to have dll-interface
add_definitions(/wd4251)
#4275: non-dll interface used as base for dll-interface class
add_definitions(/wd4275)
#4308: Negative integral constant
add_definitions(/wd4800)
add_definitions(/wd4308)
string( REPLACE "/O2" "/Od" CMAKE_CXX_FLAGS_RELWITHDEBINFO "${CMAKE_CXX_FLAGS_RELWITHDEBINFO}" )
set( CMAKE_CXX_FLAGS_RELWITHDEBINFO "${CMAKE_CXX_FLAGS_RELWITHDEBINFO}" CACHE STRING "compiler-flags" FORCE )
add_definitions(-D_USE_MATH_DEFINES)
add_definitions(-DNOMINMAX)
add_definitions(-D_CRT_SECURE_NO_WARNINGS)
add_definitions(-D_CRT_SECURE_NO_DEPRECATE)
add_definitions(-D_SCL_SECURE_NO_WARNINGS)
add_definitions(-D_CRT_SECURE_CPP_OVERLOAD_STANDARD_NAMES=1)
endif()
#####################################################################
# General Path settings
#####################################################################
include_directories( ${shark_SOURCE_DIR}/include )
include_directories( ${shark_BINARY_DIR}/include )
add_subdirectory( include )
add_subdirectory( src )
#####################################################################
# Include Examples
#####################################################################
option( BUILD_EXAMPLES "Build example programs." ON )
add_subdirectory( examples )
#####################################################################
# Include Unit Tests
#####################################################################
# Enable Testing
include(CTest)
if(BUILD_TESTING)
enable_testing()
add_subdirectory( Test )
endif()
#####################################################################
# Include Documentation
#####################################################################
option(BUILD_DOCUMENTATION "Build documentation." OFF)
if(BUILD_DOCUMENTATION)
add_subdirectory(doc)
endif()
###################################################################
# CPACK PACKAGING
###################################################################
set(INSTALL_CMAKE_DIR lib/cmake/Shark/)
# Add all targets to the build-tree export set
export(TARGETS shark SharkVersion FILE "${shark_BINARY_DIR}/SharkTargets.cmake")
# Create the SharkConfig.cmake and SharkConfigVersion files
set(SHARK_USE_FILE "${PROJECT_SOURCE_DIR}/UseShark.cmake")
set(SHARK_TARGETS_FILE "${PROJECT_BINARY_DIR}/SharkTargets.cmake")
set(SHARK_LIBRARIES ${LINK_LIBRARIES} shark)
set(SHARK_LIBRARY_DIRS "${PROJECT_BINARY_DIR}/lib")
set(SHARK_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/include" "${PROJECT_BINARY_DIR}/include" "${Boost_INCLUDE_DIR}" ${EXTRA_INCLUDE_DIRECTORIES})
# Configure the files to be exported
configure_file(SharkConfig.cmake.in "${PROJECT_BINARY_DIR}/SharkConfig.cmake")
configure_file(SharkConfigVersion.cmake.in "${PROJECT_BINARY_DIR}/SharkConfigVersion.cmake")
# Configure the SharkConfig.cmake for the install tree
set(SHARK_CONFIG_CODE "
# Compute the installation prefix from this SharkConfig.cmake file location.
get_filename_component(SHARK_INSTALL_PREFIX \"\${CMAKE_CURRENT_LIST_FILE}\" PATH)")
# Construct the proper number of get_filename_component(... PATH)
# calls to compute the installation prefix.
string(REGEX REPLACE "/" ";" _count "${INSTALL_CMAKE_DIR}")
foreach(p ${_count})
set(SHARK_CONFIG_CODE "${SHARK_CONFIG_CODE}
get_filename_component(SHARK_INSTALL_PREFIX \"\${SHARK_INSTALL_PREFIX}\" DIRECTORY)")
endforeach()
set(SHARK_CONFIG_CODE "${SHARK_CONFIG_CODE}")
set(SHARK_USE_FILE "\${SHARK_INSTALL_PREFIX}/${INSTALL_CMAKE_DIR}UseShark.cmake")
set(SHARK_TARGETS_FILE "\${SHARK_INSTALL_PREFIX}/${INSTALL_CMAKE_DIR}SharkTargets.cmake")
set(SHARK_LIBRARIES ${LINK_LIBRARIES} shark)
set(SHARK_LIBRARY_DIRS "\${SHARK_INSTALL_PREFIX}/lib")
set(SHARK_INCLUDE_DIRS "\${SHARK_INSTALL_PREFIX}/${SHARK_INSTALL_INCLUDE_DIR}" "${Boost_INCLUDE_DIR}" ${EXTRA_INCLUDE_DIRECTORIES})
configure_file(SharkConfig.cmake.in "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/SharkConfig.cmake")
# Install the SharkConfig.cmake and SharkConfigVersion.cmake
install(FILES
"${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/SharkConfig.cmake"
"${PROJECT_BINARY_DIR}/SharkConfigVersion.cmake"
"${PROJECT_SOURCE_DIR}/UseShark.cmake"
DESTINATION "${INSTALL_CMAKE_DIR}" COMPONENT dev
)
# Install the export set for use with the install-tree
install(EXPORT SharkTargets DESTINATION "${INSTALL_CMAKE_DIR}" COMPONENT dev)
#####################################################################
# Configure the Shark.h file
#####################################################################
configure_file (
"${CMAKE_SOURCE_DIR}/include/shark/Core/Shark.h.in"
"${CMAKE_BINARY_DIR}/include/shark/Core/Shark.h"
)
install(FILES
"${CMAKE_BINARY_DIR}/include/shark/Core/Shark.h"
DESTINATION "${SHARK_INSTALL_INCLUDE_DIR}/shark/Core/" COMPONENT deV
)
###################################################################
# UNINSTALL #
###################################################################
# refer to
# http://www.cmake.org/Wiki/CMake_FAQ#Can_I_do_.22make_uninstall.22_with_CMake.3F
# for details
configure_file(
"${CMAKE_CURRENT_SOURCE_DIR}/cmake_uninstall.cmake.in"
"${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake"
IMMEDIATE @ONLY)
add_custom_target(uninstall
COMMAND ${CMAKE_COMMAND} -P ${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake
)