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73 Open 62 Closed
73 Open 62 Closed
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Issues list

How does LoFreq automatically adapt to changes in coverage?
#148 opened Nov 19, 2024 by LiuH2020
Are there any suggested set of hard filters on lofreq indel file
#145 opened Oct 25, 2024 by tanu06
Lofreq viterbi
#144 opened Apr 26, 2024 by rahil19
3
Lofreq vcfplot - python version 3 support
#143 opened Feb 26, 2024 by saradunaj
What are the stringent outputs and why do I have different calling results?
#142 opened Feb 2, 2024 by ginnyintifa
IndexError: list index out of range
#140 opened Oct 18, 2023 by min0609
7
HTSLIB Variable
#138 opened Oct 16, 2023 by mkadlof
2
subprocess.CalledProcessError: non-zero exit status 1
#137 opened Oct 13, 2023 by balayev1
how to call multiple-sample variants
#136 opened Sep 8, 2023 by ChenDepp
4
lofreq vcfplot issues
#135 opened Aug 30, 2023 by Ge-Wu-pir
2
Permant error in the first step
#134 opened Aug 15, 2023 by beginner984
1
Problem of forget to indel alignment-quality to your bam-file
#133 opened Jun 26, 2023 by Xiang-Leo
4
cpus count versus available cpus
#132 opened Sep 6, 2022 by EricDeveaud
Filter depend on number of cores?
#131 opened Jun 28, 2022 by bernt-matthias
lofreq call-parallel will hang forever on subprocess error
#128 opened Jun 8, 2022 by tfmorris
Lofreq call-parallel applies filters with --no-default-filter option specified
#127 opened May 26, 2022 by gamabunta313
2
Warning: Didn't find any variants in input
#125 opened Mar 12, 2022 by Ram-Nagar
2
lofreq p-value
#124 opened Jan 5, 2022 by nelsonerikd
Variants missing in parallel mode
#123 opened Dec 9, 2021 by oleraj
2
No sample column
#122 opened Nov 30, 2021 by kostasgalexiou
Quality scores
#119 opened Sep 6, 2021 by hannahgoldswain
1
Force overwrite
#118 opened Aug 27, 2021 by robinjugas
Adding genotype information
#117 opened Jul 27, 2021 by charlesfoster
7
Using LoFreq-NQ?
#116 opened Jul 5, 2021 by fedarko
3
Meaning of normal_relaxed, tumor_relaxed, .._stringent (question)
#115 opened Jun 22, 2021 by max-vdL
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