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Added hemispheric modeling ASSIGNS, run script, and all necessary inp…
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@bokhaeng
bokhaeng committed Sep 21, 2016
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380 changes: 380 additions & 0 deletions assigns/ASSIGNS.EDGAR.cmaq.cb05_soa.HEMI_108k
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#/bin/csh -fx
#
## HEADER ##################################################################
#
# SMOKE ASSIGNS file (sets up for area, biogenic, mobile, nonroad, and point sources)
#
# Version @(#)$Id$
# Path $Source$
# Date $Date$
#
# Scenario Description:
# This assigns file sets up the environment variables for use of
# SMOKE Version 2.1 outside of the Models-3 system.
#
# Usage:
# source <Assign>
# Note: First set the SMK_HOME env variable to the base SMOKE installation
#
## END HEADER ##############################################################

## Determine operating system for compiling SMOKE
# Set executable format, makeing allownces for 64-bit archtecnture
# example: Linux2_x86_64ifort (Intel), Linux2_x86_64pg (Portland group), Linux2_x86_64gfort (gfortran)...
#
setenv BIN Linux2_x86_64ifort # Intel Fortran 64-bit compiler

## I/O Naming roots
#
setenv INVID nei2005 # Inventory input identifier
setenv INVOP HEMI_108k # Base year inventory output name
setenv INVEN HEMI_108k # Base year inventory name with version

setenv ABASE HEMI_108k # Area base case output name
setenv BBASE HEMI_108k # Biogenics base case output name
setenv MBASE HEMI_108k # Mobile base case output name
setenv PBASE HEMI_108k # Point base case output name

setenv EBASE HEMI_108k # Output merged base case name

setenv METSCEN 108km # Met scenario name
setenv GRID NH108k # Gridding root for naming
setenv IOAPI_GRIDNAME_1 HEMI_108k # Grid selected from GRIDDESC file
setenv IOAPI_ISPH 20 # Specifies spheroid type associated with grid
setenv SPC cmaq_cb05_soa # Speciation type

## Mobile episode variables
setenv EPI_STDATE 2005191 # Julian start date
setenv EPI_STTIME 000000 # start time (HHMMSS)
setenv EPI_RUNLEN 0240000 # run length (HHHMMSS)
setenv EPI_NDAY 1 # number of full run days

## Per-period environment variables
setenv G_STDATE 2005191 # Julian start date
setenv G_STTIME 000000 # start time (HHMMSS)
setenv G_TSTEP 10000 # time step (HHMMSS)
setenv G_RUNLEN 250000 # run length (HHMMSS)
setenv ESDATE 20050710 # Start date of emis time-based files/dirs
setenv MSDATE 20050710 # Start date of met time-based files
setenv NDAYS 1 # Duration in days of each emissions file
setenv MDAYS 1 # Duration in days of met time-based files
setenv YEAR 2005 # Base year for year-specific files

## Reset days if overrides are available
if ( $?G_STDATE_ADVANCE ) then
set date = $G_STDATE
@ date = $date + $G_STDATE_ADVANCE
setenv G_STDATE $date
# org setenv ESDATE `$IOAPIDIR/datshift $G_STDATE 0`
setenv ESDATE `$IOAPIDIR/jul2greg $G_STDATE`
endif

## User-defined I/O directory settings
setenv SMK_SUBSYS $SMK_HOME/subsys # SMOKE subsystem dir
setenv SMKROOT $SMK_SUBSYS/smoke # System root dir
setenv SMKDAT $SMK_HOME/data # Data root dir
setenv ASSIGNS $SMKROOT/assigns # smoke assigns files
#
## Override speciation setting, if override variable is set
if ( $?SPC_OVERRIDE ) then
if ( $SPC != " " ) then
setenv SPC $SPC_OVERRIDE
endif
endif
#
## Override year setting, if override variable is set
if ( $?YEAR_OVERRIDE ) then
setenv YEAR $YEAR_OVERRIDE
endif
#
## Make changes to names for future year and/or control strategy
set outstat = 0
source $ASSIGNS/set_case.scr
if ( $status > 0 ) then
set outstat = 1
endif

## Set dependent directory names
#
source $ASSIGNS/set_dirs.scr

## Check script settings
source $ASSIGNS/check_settings.scr

########## SMOKE formatted raw inputs #############
#
## Area-source input files
if ( $SMK_SOURCE == 'A' ) then
setenv ARINV $INVDIR/$SRCABBR/arinv.$SRCABBR.lst # Stationary area emission inventory
setenv REPCONFIG $INVDIR/$SRCABBR/REPCONFIG.area.txt # Default report configurations
setenv GSPRO $GE_DAT/gspro.$SPC.txt # Speciation profiles
setenv GSREF $GE_DAT/EDGAR/gsref.edgar.txt # Speciation x-ref
setenv ATREF $GE_DAT/EDGAR/atref_edgar.txt # Temporal x-ref
setenv ATPRO_MONTHLY $GE_DAT/EDGAR/atpro_edgar_monthly.txt # Monthly Temporal profiles
setenv ATPRO_WEEKLY $GE_DAT/EDGAR/atpro_edgar_weekly.txt # Weekly Temporal profiles
setenv ATPRO_HOURLY $GE_DAT/EDGAR/atpro_edgar_hourly.txt # Hourly Temporal profiles

endif
#
## Shared input files
setenv GEOCODE_LEVEL1 $GE_DAT/EDGAR/geocode1_edgar.txt # Geographical level 1 (country code)
setenv GEOCODE_LEVEL2 $GE_DAT/EDGAR/geocode2_edgar.txt # Geographical level 2 (state code)
setenv GEOCODE_LEVEL3 $GE_DAT/EDGAR/geocode3_edgar.txt # Geographical level 3 (county code)
setenv GEOCODE_LEVEL4 $GE_DAT/EDGAR/geocode4_edgar.txt # Geographical level 4 (tribal code)
setenv GRIDMASK $GE_DAT/EDGAR/GRIDMASK_EDGAR.ncf # GRIDMASK for EDGAR inv processing
setenv GRID_CRO_2D $GE_DAT/EDGAR/GRIDCRO2D_HEMI_108k # GRIDMASK for EDGAR inv processing
setenv GRIDDESC $GE_DAT/GRIDDESC # Grid descriptions.
setenv COSTCY $GE_DAT/costcy.txt # country/state/county info
setenv HOLIDAYS $GE_DAT/holidays.txt # holidays for day change
setenv SCCDESC $GE_DAT/scc_desc.txt # SCC descriptions
setenv GSCNV $GE_DAT/gscnv.$SPC.txt # ROG to TOG conversion facs
setenv GCNTL $GE_DAT/EDGAR/gcntl.HEMI_108k.txt # control/growth factors
setenv INVTABLE $INVDIR/other/invtable_hapcap_cb05soa.txt # Inventory table
#
## Override shared inputs
if ( $?INVTABLE_OVERRIDE ) then
if ( $INVTABLE_OVERRIDE != " " ) then
setenv INVTABLE $INVDIR/other/$INVTABLE_OVERRIDE
endif
endif

#
## Miscellaeous input files
if ( $RUN_MRGGRID == Y ) then
setenv FILELIST $INVDIR/other/filelist.mrggrid.txt
endif
if ( $RUN_GEOFAC == Y ) then
setenv AGTS $OUTPUT/no_file_set
setenv GEOMASK $INVDIR/other/no_file_set
setenv SPECFACS $INVDIR/other/no_file_set
setenv AGTSFAC $INVDIR/other/no_file_set
endif
if ( $RUN_PKTREDUC == Y ) then
setenv GCNTL_OUT $INVDIR/no_file_set #
endif
if ( $RUN_SMK2EMIS == Y ) then
setenv VNAMMAP $GE_DAT/VNAMMAP.dat
setenv UAM_AGTS $OUTPUT/uam_agts_l.$ESDATE.$NDAYS.$GRID.$ASCEN.ncf
setenv UAM_BGTS $OUTPUT/uam_bgts_l.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv UAM_MGTS $OUTPUT/uam_mgts_l.$ESDATE.$NDAYS.$GRID.$MSCEN.ncf
setenv UAM_PGTS $OUTPUT/uam_pgts_l.$ESDATE.$NDAYS.$GRID.$PSCEN.ncf
setenv UAM_EGTS $OUTPUT/uam_egts_l.$ESDATE.$NDAYS.$GRID.$ESCEN.ncf
endif
if( $RUN_UAMEMIS == Y ) then
setenv UAMEMIS $OUTPUT/no_file_set
setenv E2DNCF $OUTPUT/e2dncf.ncf
endif

## Meteorology IO/API input files (MCIP output files)
#
setenv METDAT $SMKDAT/met/run_$METSCEN
setenv GRID_CRO_2D $METDAT/GRIDCRO2D
setenv MET_CRO_2D $METDAT/METCRO2D_$G_STDATE
setenv MET_DOT_3D $METDAT/METDOT3D_$G_STDATE
setenv MET_FILE1 $MET_CRO_2D
setenv MET_FILE2 $MET_CRO_2D
# setenv GRID_CRO_3D # no longer needed due to inline option in CMAQ
# setenv MET_CRO_3D # no longer needed due to inline option in CMAQ

#
##########################################################################
#
## Output and Intermediate files
#
## Area source intermediate and output files
#
if ( $SMK_SOURCE == 'A' ) then
setenv ADAY $INVOPD/aday.$SRCABBR.$INVOP.ncf # Area NetCDF day-specific
setenv ASCC $INVOPD/ASCC.$SRCABBR.$FYIOP.txt
setenv REPINVEN $REPSTAT/repinven.$SRCABBR.$INVOP.txt
setenv ATSUPNAME $SMKDAT/run_${ASCEN}/scenario/atsup.$SRCABBR.$ASCEN.
setenv ATSUP $ATSUPNAME$G_STDATE.txt
setenv ASSUP $SMKDAT/run_$ABASE/static/assup.$SRCABBR.$SPC.$ABASE.txt
setenv AGSUP $SMKDAT/run_$ABASE/static/agsup.$SRCABBR.$GRID.$ABASE.txt
setenv ACREP $REPSTAT/acrep.$SRCABBR.$ASCEN.rpt
setenv APROJREP $REPSTAT/aprojrep.$SRCABBR.$ASCEN.rpt
setenv AREACREP $REPSTAT/areacrep.$SRCABBR.$ASCEN.rpt
setenv ACSUMREP $REPSTAT/acsumrep.$SRCABBR.$ASCEN.rpt
setenv ACTLWARN $REPSTAT/actlwarn.$SRCABBR.$ASCEN.txt
setenv AREA_O $INVOPD/area.$SRCABBR.map.$FYINV.txt
setenv ARINV_O $ARDAT/arinv_o.$SRCABBR.$FYINV.orl.txt
endif

if ( $SMK_SOURCE == A || $RUN_SMKMERGE == Y && $MRG_AREA == Y ) then
setenv AREA $INVOPD/area.map.$SRCABBR.$FYIOP.txt # Area inventory map
setenv ATMPNAME $SMKDAT/run_$ASCEN/scenario/atmp.$SRCABBR.$ASCEN.
setenv ATMP $ATMPNAME$G_STDATE.ncf
setenv ASMAT_S $SMKDAT/run_$ABASE/static/asmat_s.$SRCABBR.$SPC.$ABASE.ncf
setenv ASMAT_L $SMKDAT/run_$ABASE/static/asmat_l.$SRCABBR.$SPC.$ABASE.ncf
setenv ARMAT_L $SMKDAT/run_$ASCEN/static/armat_l.$SRCABBR.$SPC.$ASCEN.ncf
setenv ARMAT_S $SMKDAT/run_$ASCEN/static/armat_s.$SRCABBR.$SPC.$ASCEN.ncf
setenv ARSUP $SMKDAT/run_$ASCEN/static/arsup.$SRCABBR.$ASCEN.txt
setenv ACMAT $SMKDAT/run_$ASCEN/static/acmat.$SRCABBR.$ASCEN.ncf
setenv AGMAT $SMKDAT/run_$ABASE/static/agmat.$SRCABBR.$GRID.$ABASE.ncf
setenv APMAT $SMKDAT/run_$ASCEN/static/apmat.$SRCABBR.$ASCEN.ncf
setenv SRCGROUPS_OUT $OUTPUT/source_groups_out.$SRCABBR.$GRID.$ASCEN.ncf
setenv SRCGRP_REPORT $REPSTAT/srcgroups.$SRCABBR.$ASCEN.txt
endif

## Biogenic source intermediate and output files
#
if ( $SMK_SOURCE == 'B' ) then
setenv BGRD $INVOPD/bgrd.summer.$GRID.$BSCEN.ncf # Summer/default normalized bio emis
setenv BGRDW $INVOPD/bgrd.winter.$GRID.$BSCEN.ncf # Winter grd normalized bio emis
setenv BIOSEASON $GE_DAT/bioseason.$YEAR.us36.ncf
setenv B3GRD $INVOPD/b3grd.$GRID.$BSCEN.ncf
setenv SOILOUT $STATIC/soil.beis312.$GRID.$SPC.ncf # NO soil output file
endif

if ( $SMK_SOURCE == 'B' || $MRG_BIOG == 'Y' ) then
setenv BGTS_L $B_OUT/b3gts_l.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv BGTS_S $B_OUT/b3gts_s.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv B3GTS_L $B_OUT/b3gts_l.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv B3GTS_S $B_OUT/b3gts_s.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv BGTS_L_O $B_OUT/bgts_l_o.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv BGTS_S_O $B_OUT/bgts_s_o.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv B3GTS_L_O $B_OUT/b3gts_l_o.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv B3GTS_S_O $B_OUT/b3gts_s_o.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv SRCGROUPS_OUT $OUTPUT/source_groups_out.$SRCABBR.$GRID.$BSCEN.ncf
setenv SRCGRP_REPORT $REPSTAT/srcgroups.$SRCABBR.$BSCEN.txt
endif

# Mobile source intermediate and output files
#
if ( $SMK_SOURCE == 'M' ) then
setenv MSCC $INVOPD/MSCC.$SRCABBR.$FYIOP.txt
setenv REPINVEN $REPSTAT/repinven.$SRCABBR.$INVOP.txt
setenv MTSUPNAME $SMKDAT/run_${MSCEN}/scenario/mtsup.$SRCABBR.$MSCEN.
setenv MTSUP $MTSUPNAME$G_STDATE.txt
setenv MSSUP $SMKDAT/run_${MBASE}/static/mssup.$SRCABBR.$SPC.$MBASE.txt
setenv MGSUP $SMKDAT/run_$MBASE/static/mgsup.$SRCABBR.$GRID.$MBASE.txt
setenv MCREP $REPSTAT/mcrep.$SRCABBR.$MSCEN.rpt
setenv MPROJREP $REPSTAT/mprojrep.$SRCABBR.$MSCEN.rpt
setenv MREACREP $REPSTAT/mreacrep.$SRCABBR.$MSCEN.rpt
setenv MCSUMREP $REPSTAT/mcsumrep.$SRCABBR.$MSCEN.rpt
setenv MCTLWARN $REPSTAT/mctlwarn.$SRCABBR.$MSCEN.txt
# HOURLYT automaticall set and created by emisfac_run.scr script
# MEFLIST automatically set and created by smk_run.scr script
setenv SPDSUM $STATIC/spdsum.$SRCABBR.$MSCEN.txt # Speed summary file
setenv MOBL_O $INVOPD/mobl.map.$SRCABBR.$FYINV.txt
setenv MBINV_O $MBDAT/mbinv_o.$SRCABBR.$FYINV.emis.txt
setenv MBINV_AO $MBDAT/mbinv_o.$SRCABBR.$FYINV.actv.txt
endif

if ( $SMK_SOURCE == M || $RUN_SMKMERGE == Y && $MRG_MOBILE == Y ) then
setenv MOBL $INVOPD/mobl.map.$SRCABBR.$FYIOP.txt # Mobile inventory map
setenv MTMPNAME $SMKDAT/run_$MSCEN/scenario/mtmp.$SRCABBR.$MSCEN.
setenv MTMP $MTMPNAME$G_STDATE.ncf
setenv MSMAT_L $SMKDAT/run_$MBASE/static/msmat_l.$SRCABBR.$SPC.$MBASE.ncf
setenv MSMAT_S $SMKDAT/run_$MBASE/static/msmat_s.$SRCABBR.$SPC.$MBASE.ncf
setenv MRMAT_L $SMKDAT/run_$MSCEN/static/mrmat_l.$SRCABBR.$SPC.$MSCEN.ncf
setenv MRMAT_S $SMKDAT/run_$MSCEN/static/mrmat_s.$SRCABBR.$SPC.$MSCEN.ncf
setenv MRSUP $SMKDAT/run_$MSCEN/static/mrsup.$SRCABBR.$MSCEN.txt
setenv MCMAT $SMKDAT/run_$MSCEN/static/mcmat.$SRCABBR.$MSCEN.ncf
setenv MUMAT $SMKDAT/run_$MBASE/static/mumat.$SRCABBR.$GRID.$MBASE.ncf
setenv MGMAT $SMKDAT/run_$MBASE/static/mgmat.$SRCABBR.$GRID.$MBASE.ncf
setenv MPMAT $SMKDAT/run_$MSCEN/static/mpmat.$SRCABBR.$MSCEN.ncf
setenv SRCGROUPS_OUT $OUTPUT/source_groups_out.$SRCABBR.$GRID.$MSCEN.ncf
setenv SRCGRP_REPORT $REPSTAT/srcgroups.$SRCABBR.$MSCEN.txt
endif

## Point source intermediate and output files
#
if ( $SMK_SOURCE == 'P' ) then
setenv PDAY $INVOPD/pday.$SRCABBR.$INVOP.ncf # Point NetCDF day-specific
setenv PHOUR $INVOPD/phour.$SRCABBR.$INVOP.ncf # Point NetCDF hour-specific
setenv PHOURPRO $INVOPD/phourpro.$SRCABBR.$INVOP.ncf # Pt NetCDF src-spec dnl profs
setenv REPINVEN $REPSTAT/repinven.$SRCABBR.$INVOP.txt
setenv PTREF_ALT $INVOPD/ptref.$SRCABBR.smkout.txt # Point temporal x-ref
setenv PTSUPNAME $SMKDAT/run_${PSCEN}/scenario/ptsup.$SRCABBR.$PSCEN.
setenv PTSUP $PTSUPNAME$G_STDATE.txt
setenv PSSUP $SMKDAT/run_${PBASE}/static/pssup.$SRCABBR.$SPC.$PBASE.txt
setenv PCREP $REPSTAT/pcrep.$SRCABBR.$PSCEN.rpt
setenv PPROJREP $REPSTAT/pprojrep.$SRCABBR.$PSCEN.rpt
setenv PREACREP $REPSTAT/preacrep.$SRCABBR.$PSCEN.rpt
setenv PCSUMREP $REPSTAT/pcsumrep.$SRCABBR.$PSCEN.rpt
setenv PCTLWARN $REPSTAT/pctlwarn.$SRCABBR.$PSCEN.txt
setenv PNTS_O $INVOPD/pnts.map.$SRCABBR.$FYINV.txt
setenv PTINV_O $PTDAT/ptinv_o.$SRCABBR.$FYINV.orl.txt
setenv REPPELV $REPSTAT/reppelv.$SRCABBR.$PSCEN.rpt
endif

if ( $SMK_SOURCE == P || $RUN_SMKMERGE == Y && $MRG_POINT == Y ) then
setenv PNTS $INVOPD/pnts.map.$SRCABBR.$FYIOP.txt # Point inventory map
setenv PSCC $INVOPD/PSCC.$SRCABBR.$FYIOP.txt # Point unique SCC list
setenv PTMPNAME $SMKDAT/run_$PSCEN/scenario/ptmp.$SRCABBR.$PSCEN.
setenv PTMP $PTMPNAME$G_STDATE.ncf
setenv PSMAT_L $SMKDAT/run_$PBASE/static/psmat_l.$SRCABBR.$SPC.$PBASE.ncf
setenv PSMAT_S $SMKDAT/run_$PBASE/static/psmat_s.$SRCABBR.$SPC.$PBASE.ncf
setenv PRMAT_L $SMKDAT/run_$PSCEN/static/prmat_l.$SRCABBR.$SPC.$PSCEN.ncf
setenv PRMAT_S $SMKDAT/run_$PSCEN/static/prmat_s.$SRCABBR.$SPC.$PSCEN.ncf
setenv PRSUP $SMKDAT/run_$PSCEN/static/prsup.$SRCABBR.$PSCEN.txt
setenv PCMAT $SMKDAT/run_$PSCEN/static/pcmat.$SRCABBR.$PSCEN.ncf
setenv PGMAT $SMKDAT/run_$PBASE/static/pgmat.$SRCABBR.$GRID.$PBASE.ncf
setenv PPMAT $SMKDAT/run_$PSCEN/static/ppmat.$SRCABBR.$PSCEN.ncf
setenv STACK_GROUPS $OUTPUT/stack_groups.$SRCABBR.$GRID.$PBASE.ncf
setenv SRCGROUPS_OUT $OUTPUT/source_groups_out.$SRCABBR.$GRID.$PSCEN.ncf
setenv SRCGRP_REPORT $REPSTAT/srcgroups.$SRCABBR.$PSCEN.txt
setenv INLNTS_L $OUTPUT/inlnts_l.$SRCABBR.$ESDATE.$NDAYS.$GRID.$PSCEN.ncf
setenv PLAY $SMKDAT/run_$PBASE/scenario/play.$SRCABBR.$ESDATE.$NDAYS.$GRID.$MSPBAS.ncf
setenv PLAY_EX $SMKDAT/run_$PBASE/scenario/play_ex.$SRCABBR.$ESDATE.$NDAYS.$GRID.$MSPBAS.ncf
setenv PELV $STATIC/PELV.$SRCABBR.$PBASE.txt # Elev/PinG pt source list
endif

# Cumstomized Smkmerge output file names when merging all souce sectors
# If using Smkmerge to merge all sectors

if ( $SMKMERGE_CUSTOM_OUTPUT == Y && $RUN_SMKMERGE == Y || $MOVESMRG_CUSTOM_OUTPUT == Y && $RUN_MOVESMRG == Y ) then

setenv EOUT $OUTPUT/egts_l.$SRCABBR.$ESDATE.$NDAYS.$SPC.$GRID.$ESCEN.ncf
setenv AOUT $A_OUT/agts_l.$SRCABBR.$ESDATE.$NDAYS.$GRID.$ASCEN.ncf
setenv BOUT $B_OUT/bgts_l_o.$SRCABBR.$ESDATE.$NDAYS.$GRID.$BSCEN.ncf
setenv POUT $P_OUT/pgts_l.$SRCABBR.$ESDATE.$NDAYS.$GRID.$PSCEN.ncf
setenv MOUT $M_OUT/mgts_l.$SRCABBR.$ESDATE.$NDAYS.$GRID.$MSCEN.ncf
setenv PING $OUTPUT/pingts_l.$SRCABBR.$ESDATE.$NDAYS.$GRID.$PSCEN.ncf
setenv ELEV $OUTPUT/elevts_l.$SRCABBR.$ESDATE.$NDAYS.$GRID.$PSCEN.txt
setenv REPEG $REPSCEN/rep_${MM}_all_${ESDATE}_${GRID}_${SPC}.txt
setenv REPAG $REPSCEN/rep_${MM}_${SRCABBR}_${ESDATE}_${GRID}_${SPC}.txt
setenv REPBG $REPSCEN/rep_${MM}_${SRCABBR}_${ESDATE}_${GRID}_${SPC}.txt
setenv REPPG $REPSCEN/rep_${MM}_${SRCABBR}_${ESDATE}_${GRID}_${SPC}.txt
setenv REPMG $REPSCEN/rep_${MM}_${SRCABBR}_${ESDATE}_${GRID}_${SPC}.txt
setenv AGTS_L $AOUT
setenv PGTS_L $POUT
setenv PGTS3D_L $POUT
setenv EGTS_L $EOUT
setenv REPB3GTS_L $REPSCEN/repb3gts_l.$SRCABBR.$ESDATE.$NDAYS.$GRID.$BSCEN.rpt
setenv REPB3GTS_S $REPSCEN/repb3gts_s.$SRCABBR.$ESDATE.$NDAYS.$GRID.$BSCEN.rpt
else

source $ASSIGNS/setmerge_files.scr # Define merging output file names

endif

# Make directory for executables
setenv SMK_BIN "$SMKROOT/$BIN"
if( ! -e $SMK_BIN ) mkdir -p $SMK_BIN

# Create and change permissions for output directories
$ASSIGNS/smk_mkdir
if ( $status > 0 ) then
set outstat = 1
endif
#
# Delete appropriate NetCDF files for the programs that are being run
if ( -e $ASSIGNS/smk_rmfiles.scr ) then
$ASSIGNS/smk_rmfiles.scr
else
echo "NOTE: missing smk_rmfiles.scr in ASSIGNS directory for"
echo " automatic removal of SMOKE I/O API intermediate and"
echo " output files"
endif
#
# Unset temporary environment variables
source $ASSIGNS/unset.scr

if ( $outstat == 1 ) then
echo "ERROR: Problem found while setting up SMOKE."
echo " See messages above."
exit( 1 )
endif

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