prepare_for_git

#! /bin/bash

echo ""
echo "==============================="
echo "Removing all output from notebooks - please save them first!"
echo "==============================="
echo ""

read -r -p "Are you sure? [y/N] " response
echo ""

if [[ "$response" =~ ^([yY][eE][sS]|[yY])+$ ]]
then
	

	# only load the env if necessary

	if hash conda 2>/dev/null; then
	    #conda installed

	    # this is for the computerroom HG D12
	    # I think it has no side effects on other systems
	    export CONDA_ENVS_PATH=/opt/kunden/hauser/conda/envs
	else
	    #conda not installed
	    # for IAC systems
		module load conda

	fi

	source activate pyvis
	

	backup=./../.backup_pyvis/$(date '+%Y%m%d_%H%M%S')

	echo "Backup notebooks to $backup, prior nbconvert"
	echo "==============================="
	echo ""

	mkdir -p $backup
	rsync -a --exclude .backup ./ $backup

	echo "nbconvert: clearing code output"
	echo "==============================="
	echo ""
	jupyter nbconvert ./*/*.ipynb --to notebook --inplace --ClearOutputPreprocessor.enabled=True 


else

	echo "Aborted"

fi