Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Warning: Could not open read file "mRNA.fq" for reading; skipping.. #495

Open
XRL-1343959526 opened this issue Sep 25, 2024 · 0 comments
Open

Comments

@XRL-1343959526
Copy link

(xrl) [qinyu@login01 RNA-fastq]$ for i in *.fa; do

file=${i##*/}
base=${file%.fa}
bowtie2 --no-hd  -x $base -U mRNA.fq --al resuts/$base.C4_out

done
(ERR): Could not open --al output file 'resuts/bin.39.C4_out'
Exiting now ...
stat: Bad file descriptor
Warning: Could not open read file "mRNA.fq" for reading; skipping...
Error: No input read files were valid
(ERR): Could not open --al output file 'resuts/bin.77.C4_out'
Exiting now ...
stat: Bad file descriptor
Warning: Could not open read file "mRNA.fq" for reading; skipping...
Error: No input read files were valid

how to solve

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant