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Building enrichmentmap error message : could not parse line 2 of the enrichment file! #553

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freakytam opened this issue Oct 9, 2024 · 3 comments

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@freakytam
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freakytam commented Oct 9, 2024

image

hello ! friends !
I got this error message...
and here is my input data grofiler results in .txt
I don't know what is the problem maybe is it because colon and "" ?? are those can be problem in the input file?
help me out ! please !

image

#gprofiler #enrichmentmap

@risserlin
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is that ahd g:profiler GEM file format? There looks to be extra columns that EM is not expecting.
can you send me your g:profiler result file?

@freakytam
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gProfiler_hsapiens_2024. 10. 9. 오후 10-54-17__multiquery.txt

Hey , Thank you for your reply
here it is my file . do you think it is wrong form?

@risserlin
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It is the wrong file format. You need to make sure that you are getting the GEM file.

Screen Shot 2024-10-11 at 10 05 14 AM

If you are creating the file yourself then you need to make sure that it is in the generic Enrichment map file format - https://enrichmentmap.readthedocs.io/en/docs-2.2/FileFormats.html#generic-results-files

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