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Update README.md
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dfornika authored Nov 20, 2023
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Expand Up @@ -7,20 +7,20 @@ Here is a brief description of the FluViewer process. First, the provided reads
## Installation
1. Create a virtual environment and install the necessary dependencies using the YAML file provided in this repository. For example, if using conda:
```
conda create -n FluViewer -f FluViewer_v_0_1_x.yaml
conda create -n FluViewer -f environment.yaml
```

2. Activate the FluViewer environment created in the previous step. For example, if using conda:
```
conda activate FluViewer
```

3. Install the latest version of FluViewer from the Python Packing Index (PyPI).
3. Install the latest version of FluViewer from this repo.
```
pip3 install FluViewer
pip3 install .
```

4. Download and unzip the default FluViewer DB (FluViewer_db.fa.gz) provided in this repository. Custom DBs can be created and used as well (instructions below).
4. Download and unzip the default FluViewer DB (FluViewer_db.fa.gz) provided in [the BCCDC-PHL/FluViewer-db](https://github.com/BCCDC-PHL/FluViewer-db) repository. Custom DBs can be created and used as well (instructions below).

## Usage
```
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