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WHY only 1 CPU when hmmsearch #182

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PonderLi opened this issue Mar 27, 2024 · 1 comment
Open

WHY only 1 CPU when hmmsearch #182

PonderLi opened this issue Mar 27, 2024 · 1 comment

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@PonderLi
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Hi, thanks for so helpful tools!
I noticed that when using hmmsearch, the "--cpu" is always 1, could I increase it to speed up the analysis?
@snpone
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snpone commented Aug 12, 2024

no, you can't. Cause %result_hmm only dealing ko's and store the results one by one. In fact, the other step hmmsearch can run multi-threads.
So don't worry, just be patient.

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@PonderLi @snpone