Releases: 4dn-dcic/pairix
Releases · 4dn-dcic/pairix
0.2.8
- Please be advised: use this release over 0.2.7
pairixnow has option-a(autoflip) that flips the query in case the matching chromosome pair doesn't exist in the file.pairixnow has option-Wthat prints out region split character use for indexing a specific file.merge-pairs.shis now included inutil.pairixcan now take 1D query for 2D data. e.g.)pairix file.gz 'chr22:50000-60000'is equivalent topairix file.gz 'chr22:50000-60000|chr22:50000-60000'if file.gz is 2D indexed.
0.2.7
pairixnow has option-a(autoflip) that flips the query in case the matching chromosome pair doesn't exist in the file.pairixnow has option-Wthat prints out region split character use for indexing a specific file.merge-pairs.shis now included inutil.pairixcan now take 1D query for 2D data. e.g.)pairix file.gz 'chr22:50000-60000'is equivalent topairix file.gz 'chr22:50000-60000|chr22:50000-60000'if file.gz is 2D indexed.
0.2.6
0.2.5
pairixhas now option-wwhich specifies region split character (default '|') during indexing. A query string should use this character as a separater.pypairixalso now has a parameterregion_split_characterin functionbuild_index(default '|')juicer_shortform2pairs.plis now available in theutilfolder.- Index structure changed - please re-index if you're using an older version of index
0.2.4
Total linecount added
pairix -n <input.gz>
tb=pypairix.open(<input.gz>)
tb.get_linecount()
Index structure has changed - please re-index!
Note: pairix/pypairix/Rpairix 0.2.3 has been deprecated, since when used on an index built by a previous version of pairix/pypairix/Rpairix it may cause infinite memory leak.